BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20710.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480906 jgi|Araly1|480906|fgenesh2_kg.3__3607__AT2G20710.1 2582 0.0
> Ahg480906 jgi|Araly1|480906|fgenesh2_kg.3__3607__AT2G20710.1
Length=1654
Score = 2582 bits (1398), Expect = 0.0
Identities = 1570/1653 (95%), Gaps = 12/1653 (1%)
Strand=Plus/Plus
Query 25 TTAAACCTTAAACCTTAGCTTCTCTGTTTTGAAATCTGTATCA-CGGCCCAAGTATGAAG 83
||||||| |||||||||| |||| || |||||||||||||||| | | ||||||||||
Sbjct 6 TTAAACCCTAAACCTTAGGTTCTGTG-TTTGAAATCTGTATCATC-TTCAAAGTATGAAG 63
Query 84 CA---TCTTCTTCTTCTTCGTCTTGTTCTTCCAAAGCCAAATTACATTCTCAGAAGGAGC 140
|| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 64 CATCTTCTTCTTCTTCTTCGTCTTGTTCGTCCAAAGCCAAATTACATTCTCAGGAGGAGC 123
Query 141 TTCCTTTTCCACTCCGGCAAGACCACACCATCGCCGTTGGACCCTTACGACACTCTGCAG 200
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTCCTTTTTCACTCCGGCAAGACCACACCATCGCCGTTGGACCCTTACGACACTCTGCAG 183
Query 201 CGTCGGGTCGCGAGATCCGGAGATCCCTCTGCTTCGATTATCAAAGTGTTGGATGGATGG 260
||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 184 CGTCGAGTCGCGAGAGCTGGAGATCCCTCTGCTTCGATTATCAGAGTGTTGGATGGATGG 243
Query 261 CTTGATCAAGGGAATCTGGTTAAGACTTCGGAGCTCCATAGCATCATCAAGATGCTTCGA 320
|||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||
Sbjct 244 CTTGATCAAGGGCATCTGGTGAAGACTTCAGAGCTCCATGGCATCATCAAGATGCTTCGC 303
Query 321 AAGTTCAGCCGTTTCTCTCACGCTCTCCAGATATCAGATTGGATGAGTGAGCATAGAGTT 380
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 304 AAGTTCAGCCGTTTCTCTCACGCCCTTCAGATATCAGATTGGATGAGTGAGCATAGAGTT 363
Query 381 CATGAGATCTCTGAAGGAGATGTTGCGATTCGGCTTGATTTGATTGCTAAAGTTGGTGGT 440
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CATGAGATCACTGAAGGAGATGTTGCGATTCGGCTTGATTTGATTGCTAAAGTTGGTGGT 423
Query 441 TTGGGAGAAGCAGAGAAGTTTTTCGAAACTATTCCTATGGAGAGGAGGAACTACCATCTC 500
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 424 TTGGGAGAAGCAGAGAAGTTTTTCGAAACGATTCCTATGGAGAGGAGGAACTACCATCTC 483
Query 501 TACGGTGCTCTCTTGAACTGCTATGCGAGCAAGAAGGTGTTGCACAAAGCTGAGCAAGTG 560
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 484 TATGGGGCTCTCTTGAACTGCTATGCGAGCAAGAAGGTGTTGCATAAAGCTGAGCAAGTG 543
Query 561 TTTCAGGAGATGAAAGAGCTTGGCTTCCTTAAAGGTTGTCTTCCCTACAATGTGATGCTG 620
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 544 TTTCAGGAGATGAAAGAGCTTGGCTTCCTCAAAGGTTGTCTTCCCTACAATGTGATGCTG 603
Query 621 AATCTCTATGTCCGGACTGGGAAATACACAATGGTTGAGAAGCTGCTGCGCGAAATGGAG 680
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 604 AATCTCTACGTCCGGACTGGGAAATACACAATGGTTGAGAAGTTGCTGCGCGAAATGGAG 663
Query 681 GATGAGACTGTGAAGCCAGACATCTTCACAGTGAACACGCGGTTGCATGCTTATTCGGTT 740
|||| |||||||||||| || ||||||||||||||||||||| | ||||||||||||| |
Sbjct 664 GATGGGACTGTGAAGCCCGATATCTTCACAGTGAACACGCGGCTCCATGCTTATTCGGCT 723
Query 741 GTATCTGATGTAGAGGGGATGGAGAAGTTTCTTATGCGTTGTGAGGCTGACCAGGGGCTT 800
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 724 GTATCTGATGTAGAGGGGATGGAGAAGTTTCTGATGCGTTGTGAGGCTGACCCGGGACTT 783
Query 801 CATTTGGACTGGCGCACTTACGCCGATACAGCGAATGGCTACATAAAGGCTGGATTAACT 860
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 784 CATTTGGACTGGCGCACTTACGCTGATACAGCGAATGGCTACATAAAGGCTGGATTAACT 843
Query 861 GAAAAGGCTCTAGAGATGCTGCGTAAATCAGAGCAGATGGTGAATGCTCAGAAAAGAAAG 920
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 844 GAAAAGGCGATAGAGATGCTGCGTAAATCAGAGCAGATGGTGAATCCTCAGAAAAGAAAG 903
Query 921 CATGCCTATGAGGTTCTCATGTCATTCTATGGAGCTGCAGGTAAGAAAGAAGAGGTGTAC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 CATGCCTATGAGGTTCTCATGTCATTCTATGGAGCTGCAGGTAAGAAAGAAGAGGTGTAC 963
Query 981 CGTCTCTGGAGCTTGTACAAGGAGCTGGACGGGTTCTACAACACTGGATACATAAGCGTG 1040
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 964 CGTCTCTGGAGCTTGTACAAGGAGCTGGACGGGTTCTACAACACGGGATACATAAGCGTG 1023
Query 1041 ATCAGTGCACTCTTGAAGATGGATGACATAGAGGAGGTGGAGAAAATTATGGAAGAGTGG 1100
||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 1024 ATCAGTGCACTCTTGAAGATGGATGACATCGATGAGGTTGAGAAGATTATGGAAGAGTGG 1083
Query 1101 GAAGCTGGACACTCCCTTTTCGATATTCGGATCCCACACTTGTTAATAACGGGTTACTGC 1160
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1084 GAAGCTGGACACTCCCTTTTCGATATCCGGATCCCACACTTGTTAATAACGGGGTACTGC 1143
Query 1161 AAGAAAGGAATGATGGAGAAGGCAGAGGAAGTAGTAAATATATTGGTCCAGAAGTGGAGA 1220
||||| || |||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1144 AAGAAGGGGATGATGGAAAAGGCAGAGGAAGTAGCAAAGATATTGGTCCAGAAGTGGAGA 1203
Query 1221 GTGGAGGATACAAGCACATGGGAGCGTTTAGCTCTTGGGTACAAGATGGCGGGTAAAATG 1280
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1204 GTGGAGGATACAAGCACATGGGAGCGTTTAGCTCTCGGGTACAAGATGGCGGGTGAAATG 1263
Query 1281 GAGAAGGCGGTGGAGAAATGGAAGAGAGCAATAGAGGTGAGCAAGCCAGGGTGGAGACCA 1340
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GAGAGGGCGGTGGAGAAATGGAAGAGAGCAATAGAGGTGAGCAAGCCAGGGTGGAGACCA 1323
Query 1341 CACCAGGTTGTGCTGATGAGCTGTGTGGATTATCTGGAGGGTCAAAGAGACATGGAGGGT 1400
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1324 CACCAGGTTGTGCTGATGAGCTGTGTGGACTATCTGGAGGGTCAAAGAGACATGGAGAGT 1383
Query 1401 TTGAGAAAGATTTTGAGACTGTTAAGCGAGCGAGGACACATTTCATACGATCAGCTACTG 1460
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1384 TTGAGAAAGATTTTGAGACTGTTAAGCGAGCGAGGACACATATCATACGATCAGCTACTG 1443
Query 1461 TACGACATGAACGGTGCTGGACTGAGTTGGAAGATAGTCGATGCAATGGGAAAAGGTCGA 1520
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TACGATATGAACGGAGCTGGACTGAGTTGGAAGATAGTCGATGCAATGGGAAAAGGTCGA 1503
Query 1521 TACGTTGAGGAAAGAGAAGTACGAATCTAGAAAGTGACACATTCCAAACAATGAAGTCTT 1580
|||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 1504 TACGTTGAGGAAGGAGAAGTAAGAATCTAGACAGTGACACTTTCCAAACAATGAAGTCTT 1563
Query 1581 -ATAACCATTTGGATAAATGCAAGTTCGTTTCATCC-ACAAGCATTTTTTGGGCTTAAGC 1638
| | |||||||| ||||||||| ||||||||| || || ||||||||||||| |||| |
Sbjct 1564 GAGA-CCATTTGGCTAAATGCAATTTCGTTTCA-CCTACTAGCATTTTTTGGGTTTAAAC 1621
Query 1639 TTGTCTTAA-A-TGAGTTAACTAATAATAGATT 1669
||||||||| | |||||||||||||||||||||
Sbjct 1622 TTGTCTTAAGAATGAGTTAACTAATAATAGATT 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5