BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20720.1
Length=2213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937 1363 0.0
Ahg937864 jgi|Araly1|937864|scaffold_502055.1 80.5 5e-14
> Ahg319921 jgi|Araly1|319921|fgenesh1_pm.C_scaffold_3002937
Length=1275
Score = 1363 bits (738), Expect = 0.0
Identities = 835/882 (95%), Gaps = 6/882 (1%)
Strand=Plus/Plus
Query 1148 GCTGAAGATCACGACATGGTGGTGAAGCTTCTTGGCGAGATGGACGAGAAAAAGATGCAA 1207
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 397 GCTGAAGATCACGACATGGTGGTGAAGCTTCTTGGTGAGATGGACGAGAAAAAGATGCAA 456
Query 1208 CCCCAAGGACTATGC-TTTGTCAAGCTCTTGACTTCTTACTCTATGGCATCTG-TTGTAG 1265
||||||||||| | | |||| |||||| || ||||||||||| |||||||||| || |||
Sbjct 457 CCCCAAGGACTGT-CTTTTGACAAGCTTTTAACTTCTTACTCAATGGCATCTGATT-TAG 514
Query 1266 ATGTACAAGGTGTGGAGAAGTTTTTGAGCAAGTGGGAGGTGATGATTCAGGACAAATGGA 1325
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 515 ATGTACAAGGAATGGAGAAGTTTTTGAGCAAGTGGGAGGTGATGATTCAGGAAAAATGGA 574
Query 1326 CCACATTCTACTTTCCAGGATTGGTCTACATACGAGCAGGATTTATGGAAAAGGGTTTAG 1385
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 575 CCACATTCTACTTTCCAGGATTGGTCTACATACGAGCAGGGTTTATGGAAAAGGGTTTAG 634
Query 1386 CTTTGCTTCGTAGGTCAGAGACATTTGTTGATGACGGCTG-TAGAGAAATCATATATGGA 1444
|||||||||||||||||||| ||| ||||| ||||||| | |||||||||||| ||||||
Sbjct 635 CTTTGCTTCGTAGGTCAGAGCCATCTGTTGGTGACGGC-GCTAGAGAAATCATCTATGGA 693
Query 1445 TGTCTCATGACTGTTTATTGTAACGAGAATCTAACAGAGGATGTTTACCGTCTCTGGAAC 1504
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 694 TGTCTCATGACTGCTTATTGTAGCGAGAATCTAACAGAGGATGTGTACCGTCTCTGGAAC 753
Query 1505 TTGGCTAAGGACTATGGGATATCCTTTGACAGTTCCAGATGTTCTGATATCGTCAAGGCG 1564
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 754 TTGGCTAAGGACTATGGGATATCCTTTGACAGTTCCAAATGTTCTGATATCGTCAAGGCG 813
Query 1565 TTTACGAAGAAGGGTGATCTCGATGGGGTTATGGAAGAGTGGAATGAGTGTCCCAATCTT 1624
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 814 TTTACGAAGAAGGGTGATCTCGATGAGGTTATGGAAGAGTGGAATGAGTGTCCCAATATT 873
Query 1625 GATCTGATGGACTTTGGTCTCCAACATAGATGCGTGAAGGAGGAGGCTGAGAAGGTTGTT 1684
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 874 GATCTGATGGATTTTGGTCTCCAACATAGATGTATGAAGAAGGAGGCTGAGAAGATTGTG 933
Query 1685 GATATGCTTGGGAAGAAGGAGAGCAAATGGGAGAGTTTGGCTCACAAGGTTAATACTTTG 1744
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 934 GATATGATTGGGAAGAAGGAGAGCAAATGGGAGAGTTTGGCACACAAGGTTAATAATTTG 993
Query 1745 GTGGAGGATGAAGATGCTAAAGAAGAGGAGAGGAGGAAGAGAGTGGCAGAGGCCATGGAA 1804
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GTGGAGGATGAAGATGATAAAGAAGAGGAGAGGAGGAAGAGAGTGGCAGAGGCCATGGAG 1053
Query 1805 GGGAGGCTGCATGACCGCTGGAACCCAAAGAACAGCATGGCTCTCTCCGCTTTTGCCTGC 1864
|||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||
Sbjct 1054 GGGAGGCTGCATGACCAATGGAACCCAAAGAGCAGCATGGCTCTGTCCGCTTATGCCTGC 1113
Query 1865 GTGCAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCGACATTCTGAGACTTCTG 1924
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1114 GTGCAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCAACATTCTGAGACTCCTG 1173
Query 1925 AATAAGCGAGAGCAAGTGTCGCATGCAATGGACAAAAACCGATTGAGCCTGAAGATGGTG 1984
|| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1174 AACAAGCGAGAGCAAGTGTTGCATGCAATGGACAAAGACCGATTGAGCCTGAAGATGGTG 1233
Query 1985 GAGGCAATGAGAGGAGGAGGATACGTTGGTGGAGATGATTAA 2026
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GAGGCAATGAGAGGAGGAGGATACGTTGGTGGAGATGATTAA 1275
Score = 595 bits (322), Expect = 4e-169
Identities = 372/397 (94%), Gaps = 0/397 (0%)
Strand=Plus/Plus
Query 590 ATGAAGCATCTTCTCCGACAACAATTCAGTAATTTCTTCTGGATCCTTCCTTGCAGACGT 649
||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGAAGCATCTTCTCCGGCAACAATTCAGTAATTTTTTCTGGAAACTTCCTTGCAGACGT 60
Query 650 TCCTTCGTTCATTTCCCCAAAACCATTCCTTCGCCGGAGCTCATTAATGACACTCTCAAG 709
||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 61 TCCTTCGTTCATTTCCCTAAAACCATTCCTTCACCGGAGCTCATTGATGACACTCTCAAG 120
Query 710 CGTCGGATCCAGAGAGTCCAAGATTCGTCAGTCTCCATCACTCCGTTGCTCCGAGAATGG 769
||||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 121 CGTCGGATCGAGCGAGTCCAAGATTCGACGGTCTCCATCACTCCGTTGCTCCGAGAATGG 180
Query 770 TGCCAACGCGGAAATCAAACGGGACTTTCAAAACTCAGGAGCATCATTACCTCTCTTCAC 829
||| |||||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||
Sbjct 181 TGCGAACGCGGAAATCAAACGGCACTTTCAGAACTCAGAAGCATCATCACCTCTCTTCAC 240
Query 830 AGATCCAATCGCTTCTCTCACGCTCTCCAGGTATCGGATTGGATGATTGAACAAAAAGCC 889
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATCCAATCGCTTCTTTCACGCTCTCCAGGTATCGGATTGGATGATTGAACAAAAAGCT 300
Query 890 TATAAGCTGAGTTCAATGGATTTTGAGCGACGACTTTTCTTGGCTGCTAAAGTTGGTGGT 949
|| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||| |||||
Sbjct 301 TACAAGCTGAGTTCGATGGATTTTGAGCGACGGCTTTACTTGACTGCAAAAGTTTGTGGT 360
Query 950 GTGGAAGAAGCGGCTAAGTTCTTCGAGACTGTTCCTG 986
|||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGAAGAAGCGGCTAAGTTCTTCGAGACTGTTCCTG 397
> Ahg937864 jgi|Araly1|937864|scaffold_502055.1
Length=1031
Score = 80.5 bits (43), Expect = 5e-14
Identities = 118/153 (77%), Gaps = 10/153 (7%)
Strand=Plus/Plus
Query 1868 CAATATGTGGAGGGTCGGAGAGACATGGAGAGTACAGCCGACATTCTGAGACTT-CTGAA 1926
|||||||||||||| | |||||||| |||||||||| || || ||||| || ||
Sbjct 856 CAATATGTGGAGGGCCATAGAGACATTGAGAGTACAGTTGATGTTTTGAGA-TTGTTGGG 914
Query 1927 TAAGCGAGAG---CAAGTGTCGCATGCAATGGACAAAAACCGATTGAGCCTGAAGA-TGG 1982
||||| ||| |||| | || | |||| || |||||||||| ||| | |||
Sbjct 915 GAAGCGTGAGTCACAAG-AT-GC-TATTATGGGTGAAGACCGATTGAGTAGGAA-ATTGG 970
Query 1983 TGGAGGCAATGAGAGGAGGAGGATACGTTGGTG 2015
|||||||||||||||||||||||||||||||||
Sbjct 971 TGGAGGCAATGAGAGGAGGAGGATACGTTGGTG 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83303365815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5