BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20724.1

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931953 jgi|Araly1|931953|scaffold_304410.1                        243    1e-63


> Ahg931953 jgi|Araly1|931953|scaffold_304410.1
Length=244

 Score =  243 bits (131),  Expect = 1e-63
 Identities = 135/137 (99%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  261  aagaaagaagaagaTGGGAGCATTTGAGGATCAGGTGAAGATGAGGGCGTTGGAGCTGAA  320
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  8    AAGAAAGAAGAAGATGGGAGCATTTGAGGATCAGGTGAAGATGAGGGCCTTGGAGCTGAA  67

Query  321  ACATCTGTTCAAGAAAGGCATCAAAGTTGTCGGCAAATCTTGTAAGAAGGGTTGGTCCAA  380
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68   ACAGCTGTTCAAGAAAGGCATCAAAGTTGTCGGCAAATCTTGTAAGAAGGGTTGGTCCAA  127

Query  381  AGTCAAGAACCTTCGTC  397
            |||||||||||||||||
Sbjct  128  AGTCAAGAACCTTCGTC  144



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19955373047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5