BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20725.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931954 jgi|Araly1|931954|scaffold_304411.1 1439 0.0
> Ahg931954 jgi|Araly1|931954|scaffold_304411.1
Length=943
Score = 1439 bits (779), Expect = 0.0
Identities = 895/950 (94%), Gaps = 11/950 (1%)
Strand=Plus/Plus
Query 51 CTCTCTGGTCAGAGACGGCGATGATTCTAGGCCGATGGGTTTCCTTCAGTTGCGGAAACA 110
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CTCTCTGGTCAGAGACGGCGATGATTCTAGGCCGATGGGTTTCCTTCAGTTGCGTCAACA 60
Query 111 CGCCGGTGACTAATTG-TTCCGAACGACGACGACATACGGAGTTTCGTCGTCTCTCCTCT 169
||||||| ||||| | |||||| |||||| ||||| ||||||||||| |||||||||||
Sbjct 61 CGCCGGTTACTAA-GGTTTCCGACCGACGAAGACATTCGGAGTTTCGTGGTCTCTCCTCT 119
Query 170 GCTAGTACTTGTCGACCTTCTCTCATATGCTCTTGTCTCAAAAGCAAATCCTCCCAAGAA 229
||| |||||||| |||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct 120 ACTACCACTTGTCGTCCTTCTCTCAGATGCTCTTGTCTCAAAAGCAAATCCACACAAGAA 179
Query 230 ACTACTCAGATTGA-ACAGTTGGGGAATGGAGAAGGGTTCTCAGTTTTGGCATCAGAGAT 288
|||||||||||||| | |||||||||||| | |||||||||| |||||||||||||||||
Sbjct 180 ACTACTCAGATTGAGA-AGTTGGGGAATGAACAAGGGTTCTCCGTTTTGGCATCAGAGAT 238
Query 289 TCCATGGGAGGATGATAACATATGGAGCACATTTGCTCTTTACATGTTCTCTCTGCATAT 348
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCCATGGGAAGATAATAACATATGGAGCACATTTGCTCTTTACATGTTCTCTCTGCATAT 298
Query 349 TCCTCTCAGTTTTGGGGGTTTATCCATTGTTGCCAACATACTCCACCGGCAGGTTCTTGA 408
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 TCCTCTCAGTTTTGGGGGTTTATCCATTGTTGCCAACACACTCCACCGGCAGGTTCTTGA 358
Query 409 TCCTCAGACCCAAGTGCTATCACTTGTGGTTCTCCAAATGGTAGAACTTGCAGGGACAGT 468
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 TCCTCAGACCCAAGTGCTATCACTTGTGGTTCTCCAAATGGTAGAACTTTCAGGGACAGT 418
Query 469 CTTGCTGCTGAGGACCACAGCGAAGCCTCAGTGCAAATCAATCAACTTTCTAAAGGGTAA 528
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 CTTGCTGCTGAGGACCACAGCGAAGCCTCAGTTCAAATCAATCAACTTTCTAAAGGGTAA 478
Query 529 TAACGAAACAAGGGAAGGAAGAAACTGGGTGGTTGGCTCAGCATTGGGTTTGGGATGTCT 588
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAATGAATCAAGAGAAGGAAGAAACTGGGTGGTTGGCTCAGCATTGGGTTTGGGATGTCT 538
Query 589 TGTGGGCTTTATCTTCGTCACGTCGCTTGTAGCTGATCAACTCTTTGGCCCTAAGGCTGT 648
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TGTGGGCTTTATCTTCGTCACGTCGCTTGTAGCTGATCAACTCTTTGGCTCTAAGGCTGT 598
Query 649 ACATGAATCAGAATTGGAGAAGATAATGGTGAGCGGGGAAGTGGCGAGAAGCG-GATGTT 707
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 599 ACATGAATCTGAATTGGAGAAGATAATGGTGAGCGGGGAAGTGGCGAGAAGCGAG-TGTT 657
Query 708 TTGCTCTCTACTGCG-TAGTAGCTCCCATCCTTGAGGAGATAGTGTACAGACGCTTTCTC 766
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGCTCTCTACTGCGGT-GTAGCTCCCATCCTTGAGGAGATAGTGTACAGACGCTTTCTA 716
Query 767 CTGACCTCCTTAGCGTCGAGAATGGAATGGTGGAAGGCACTAGTGATCAGCTCAGGAGTA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CTGACCTCCTTAGCGTCGAGAATGGAATGGTGGAAGGCACTAGTGATCAGCTCAGGAGTA 776
Query 827 TTTGCTGCAGGTCACTTCTCAGGTGAGGATTTTGTGCAGCTGTTTGGGATAGGTTGCGGT 886
||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 777 TTTGCAGCAGCTCACTTCTCAGGTCAGGATTTTGTGCAGCTGTTTGGGATAGGGTGCATT 836
Query 887 CTCGGGTTATGTTACAGCTGGTCAGGGAACTTAGCCTCATCAGTGCTCGTCCACTCCTTG 946
|||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 837 ATCGGGTCATGTTACATCTGGTCAGGGAACTTGGCCTCGTCAGTGCTCGTCCACTCATTG 896
Query 947 TACAATGCATTGACACTTCTCTTCTCTTAGCCACGTTCAGATGACAAGGA 996
|||||||| || ||| | | || |||||||||||||||||||||||||||
Sbjct 897 TACAATGCCTTAACAAT-C-CT-CTCTTAGCCACGTTCAGATGACAAGGA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5