BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20740.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480909 jgi|Araly1|480909|fgenesh2_kg.3__3610__AT2G20740.1 1363 0.0
> Ahg480909 jgi|Araly1|480909|fgenesh2_kg.3__3610__AT2G20740.1
Length=978
Score = 1363 bits (738), Expect = 0.0
Identities = 830/873 (95%), Gaps = 12/873 (1%)
Strand=Plus/Plus
Query 82 TCTTTATCGATTTCTCTTCTTCCTAGACCCAACAGACGAAGAGAATTTG--TTGTTG--G 137
||||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||| |
Sbjct 24 TCTTTTTCGATTTCTCTTCCTCCTAGACCCAACCGACGAAGAGAATTTGATTTGTTGTTG 83
Query 138 -TTGTCTCTGGTCTCTTCGTCTAGGttttttttGGGTTATTAAAGATGGTGAGGATCGTG 196
|||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 84 ATTGTGTCTGGTCTCTTCGTCTAGG--GTTTTTGGGTGATTAAAGATGGTGAGGATCGTG 141
Query 197 AGAAGTTGTTTACAGTCCATGTTAAAGCTCGTGAATTCTCTAATTGGGATGGTTGGGATT 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AGAAGTTGTTTACAGTCCATGTTAAAGCTCGTGAATTCTCTAATTGGGATGGTTGGGATT 201
Query 257 GCTATGATTCTCTACGCTGTTTGGCTGATTAGGCAATGGCAAGAACAAATGGGAAATCTT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GCTATGATTCTCTACGCTGTTTGGCTGATTAGGCAATGGCAAGAACAAATGGGAAATCTT 261
Query 317 CCTTTTGCTGATTCTGATCACCCTGTTCCGTGGTTCATTTATTCATTTCTTGGTCTCGGG 376
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 262 CCATTTGCTGATTCTGATCACCCTGTTCCATGGTTCATTTATTCATTTCTCGGTCTCGGG 321
Query 377 GCCATTCTCTGTGTTGTCACTTGTGCCGGGCACATAGCTGCTGAAACCGTGAATGGATGT 436
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 322 GCCATTCTCTGTGTTGTCACTTGCGCCGGGCACATAGCTGCTGAAACCGTGAATGGATGT 381
Query 437 TGCCTTTACTTGTATATGGGATTCATAGTCTTGCTAACTATGGTTGAAGGCGGTGTAGTT 496
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct 382 TGCCTTTACTTGTATATGGGATTCATTGTCTTGCTAGTTATGGTTGAAGGCGGTGTGGTT 441
Query 497 GCCGATATCTTTCTAAACCGTGACTGGAAAAAGGACTTTCCAGAGGATCCAAGTGGTGCT 556
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GCCGATATCTTTCTAAATCGTGACTGGAAAAAGGACTTTCCAGAGGATCCAAGTGGTGCT 501
Query 557 TTCCACCAGTTCTCTAAGTTCATCGAGTCAAACTTCAAGATTTGCAAGTGGATAGGTCTC 616
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 502 TTCCACCAGTTCTCTAAGTTCATCAAGTCAAACTTCAAGATTTGCAAGTGGCTAGGTCTC 561
Query 617 TCTATTGTCTGTGTCCAGGGTCTATCAGTTTTAATAGCCATGTTGCTCAAAGCTCTTGGA 676
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 562 TCTATTGTCTGTGTCCAGGGTCTATCAGTTTTATTAGCCATGTTGCTCAAAGCTCTTGGA 621
Query 677 CCTCACCCTCACCGACATTATGATAGTGACGATGAATACAATGTAAGCACAGTTGCACTC 736
||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 622 CCTCACCCTTACCGTCATTATGACAGTGACGATGAATACAATGTAAGCACAGTTGCACTC 681
Query 737 CTGCAGGATGCTCGTCAGCCGCCTCCATACGTTGTTGGAGAACCCATGTATGGAGCCAAA 796
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CTGCAGGATGGTCGTCAGCCGCCTCCATACGTTGTTGGAGAACCCATGTATGGAGCCAAA 741
Query 797 CCGGGAGCTTGGACAGTTAG-ATTAATGAAAGGGCAAACCGGTGAGAGGTGAAAACAAAG 855
||||||||||| ||||||| |||||||||||||| ||||| ||||||||| |||| |||
Sbjct 742 TCGGGAGCTTGGGCAGTTAGGATTAATGAAAGGGCGAACCGATGAGAGGTGCAAACCAAG 801
Query 856 AAACTCGTAGAAGAAAA-TGGCAAAGCAGAGTCTGCTCTTTCCATGTGTGCATTTACTTT 914
||||||||||||||||| |||||||| || |||||| ||||||||||||||||||| ||
Sbjct 802 AAACTCGTAGAAGAAAAATGGCAAAG-AG--TCTGCTATTTCCATGTGTGCATTTACATT 858
Query 915 GGCTTCTTATTGCATCTCTTTCTTTCACTATTT 947
|||||||| ||||||||||||||||||||||||
Sbjct 859 GGCTTCTTGTTGCATCTCTTTCTTTCACTATTT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5