BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20750.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480911 jgi|Araly1|480911|fgenesh2_kg.3__3612__AT2G20750.1 1546 0.0
> Ahg480911 jgi|Araly1|480911|fgenesh2_kg.3__3612__AT2G20750.1
Length=1132
Score = 1546 bits (837), Expect = 0.0
Identities = 1025/1114 (92%), Gaps = 20/1114 (2%)
Strand=Plus/Plus
Query 36 GtttttttGTTGGCTAGTCTCTTCGGTCAAAATGCAGCTCTTTCCGGTCATCCTACCGAC 95
|||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 25 GTTTTTTT-TTGGCTTGTCTCTCCGGTCAAAATGCAGCTCTTTCCGGTCATCCTACCGAC 83
Query 96 ACTATGCGTCTTCCTCCACCTTCTAATAAGTGGCTCTGGCTCTACTCCACCGTTGACTCA 155
||||||||||||| |||||||||||| | | |||||||||||||||||| ||||||||||
Sbjct 84 ACTATGCGTCTTCTTCCACCTTCTAAGAGGCGGCTCTGGCTCTACTCCATCGTTGACTCA 143
Query 156 CTCCAATCAACAAGTGGCAGCCACTCGTTGGCTTCCCGCCACCGCAACCTGGTACGGAAG 215
||||| |||||||||||||| ||| |||||||||||||| || || ||||||||||||||
Sbjct 144 CTCCAGTCAACAAGTGGCAGTCACCCGTTGGCTTCCCGCAACTGCCACCTGGTACGGAAG 203
Query 216 TGCCGAGGGAGACGGCAGCAGCGGAGGAGCTTGTGGTTACGGATCGTTGGTGGACGTGAA 275
| ||||||| ||||||||||| |||||||||||||||||||| || | |||||||||||
Sbjct 204 TCCCGAGGGCGACGGCAGCAGTGGAGGAGCTTGTGGTTACGGGTCACTAGTGGACGTGAA 263
Query 276 GCCGTTTAAGGCTAGAGTCGGAGCGGTGAGTCCGATTCTGTTCAAAGGTGGTGAAGGCTG 335
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 264 GCCGTTTAAGGCAAGAGTTGGAGCGGTGAGTCCGATTCTGTTCAAGGGTGGTGAAGGCTG 323
Query 336 CGGTGCATGCTACAAGGTCAGGTGTCTCGACAAGACCATTTGCTCTAAGAGAGCAGTCAC 395
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TGGTGCATGTTACAAGGTCAGGTGTCTCGACAAGACCATTTGCTCTAAGAGAGCAGTCAC 383
Query 396 CATTATTGCCACCGACCAGTCACCGTCAGGACCATCTGCTAAAGCAAAACACACTCATTT 455
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 384 CATTATTGTCACCGACCAGTCACCGTCAGGACCATCTGCTAAAGCAAACCACACTCACTT 443
Query 456 CGACCTCAGTGGCGCCGCCTTTGGACATATGGCTATTCCCGGCCATAACGGTGTCATCCG 515
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CGACCTTAGCGGTGCCGCCTTTGGACATATGGCTATTCCCGGCCATAACGGTGTCATCCG 503
Query 516 CAACCGTGGCCTATTAAACATCCTCTACCGCCGAACGGCATGCAAATACAGAGGGAAGAA 575
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 504 CAACCGTGGCCTATTAAACATCCTCTACGGCCGAACGGCATGCAAATACAAAGGGAAGAA 563
Query 576 CATAGCGTTTCATGTGAACGCAGGATCAACTGATTATTGGTTATCGCTTCTCATTGAGTA 635
|||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 564 CATAGCCTTCCATGTGAATGCAGGATCAACAGATTATTGGTTATCTCTTCTCATTGAGTA 623
Query 636 TGAAGACGGTGAAGGAGACATTGGCTCTATGCACATTCGTCAAGCGGGATCTAAGGAGTG 695
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 624 TGAAGACGGTGAAGGAGACATTGGCTCTATGCACATTCGTCAAGCGGGGTCTAAGGAGTG 683
Query 696 GATATCGATGAAGCACATATGGGGAGCGAACTGGTGCATCGTCGAAGGACCACTCAAGGG 755
|||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 684 GATAGCAATGAAGCACATATGGGGAGCAAACTGGTGCATTGTCGAAGGACCACTCAAGGG 743
Query 756 ACCATTCTCCGTGAAGCTCACAACTTTGTCCAACAATAAGACACTCTCCGCCACCGACGT 815
||||||||| |||||||| ||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 744 ACCATTCTCTGTGAAGCTTACAACTTTGTCCAACAACAAGACACTCTCTGCCGCCGACGT 803
Query 816 CATCCCCAGTAACTGGGTTCCCAAAGCTACTTACACCTCTCGCCTCAACTTCTCCCCTGT 875
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 804 CATCCCCAGTAACTGGGTTCCCAAAGCTACTTACACCTCCCGCCTCAACTTCTCCCCTGT 863
Query 876 TCTCTAATTAGCCTCTCTTCaaaaaaaTTTTGTTGTGGGAGAGAGGAACACAGAGAAGAC 935
|||||||||| || |||||| |||||||||||||||||| |||||||||| |||
Sbjct 864 TCTCTAATTAACCACTCTTCGTTTTT-TTTTGTTGTGGGAGAGAGTAACACAGAGAGGAC 922
Query 936 AATGAGTGAGCCATCTCCAAAGTTAGGGGATTAAGAGCTTTTCATTGTGTGTGTGACTAC 995
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 923 AATGAGTGAGCCATCTCCAAAGTTAGGGGAAGAAGAGCTTG-CAATGTGTGTGTGACTAC 981
Query 996 TAACATTCTATGTTGTCCCTTTTCAttttttt-CCTTCTCCATAGGGATGTGTGTATCA- 1053
|||| || |||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 982 TAACTTTTTATGTTGTCCATTTTCATTTTTTTTCCTTGTCCATAGGGATGTGTGTATCAA 1041
Query 1054 TC-T--ATAATGTTGTTTGTGGGACATTACTATATA-A-GAA-----TTTACAAAAGATG 1103
|| | ||||| |||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1042 TCATCTATAATCTTGTTTGTGGGACATTACTATATATAAGAAGAGAATTTACAAAAGATG 1101
Query 1104 TAATAATGTA-ATATGCAATCTCATTCCTTTTTT 1136
||||||||| | | |||||||||||||||||
Sbjct 1102 TAATAATGTGCA-A---AATCTCATTCCTTTTTT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5