BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20760.1
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931957 jgi|Araly1|931957|scaffold_304414.1 1325 0.0
> Ahg931957 jgi|Araly1|931957|scaffold_304414.1
Length=1039
Score = 1325 bits (717), Expect = 0.0
Identities = 957/1060 (90%), Gaps = 67/1060 (6%)
Strand=Plus/Plus
Query 136 CATGGCGACTTTTGATGATGGAGATTTCCCAGCTCAAACCCATTCTCCGTCTGAACACGA 195
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 22 CATGGCGACTTTTGACGACGGAGATTTCCCAGCTCAAACCCATTCTCCGTCTGAACACGA 81
Query 196 AGACTTTGGTGGCTACGATAATTTCTCCGAAGCACAGCAACCTCCGACTCAACATCAATC 255
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 82 CGACTTTGGTGGCTACGATAATTTCTCCGAAGCCCAGCAACCTCCGACTCAACATCAATC 141
Query 256 CGGTGGATTCTCTTC---T--T-----T----C--A---AT-GGAG-ATCCTGCTTCCCC 294
||||||||||||||| | | | | | || ||| |||||||||||||
Sbjct 142 CGGTGGATTCTCTTCTTTTAATGGAGATGGAGCTTATGGATCTGAGAATCCTGCTTCCCC 201
Query 295 AAATGGATATGGATTTGGTGCTTCTTCACCTAACCATGACTTTTCCTCGCCTTTTGAATC 354
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 202 AAATGGATATGGATTTGGTGCTTCCTCACCTAACCATGACTTTTCCTCGCCTTTTGAATC 261
Query 355 TTCCGTTAACGATGCTAACGGAAACGGCGGCGGCAGCGGTGGTGATGCGATCTTCGCTTC 414
||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 262 TTCCGTTAACGATGCTAACGG--A----------AGC---GGTGATGCGATCTTCGCTTC 306
Query 415 CGATGGTCCGATTCTTCCAGATCCAAATGAGATGAGAGAGGAGGGTTTCCAACGCCGTGA 474
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 307 CGATGGTCCGATTCTTCCAGATCCAAATGAGATGCGGGAGGAGGGTTTCCAACGCCGTGA 366
Query 475 GTGGCGCCGTTTGAACACCATTCACCTTGAGGAGAAGGAAAAGAAAGAGAAGGAGATGCG 534
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GTGGCGCCGTCTGAACACTATTCACCTTGAGGAGAAGGAAAAGAAAGAGAAGGAGATGCG 426
Query 535 GAATCAGATCATAACTGAAGCAGAAGATTTCAAGAAAGCCTTCTATGAGAAAAGAGACAA 594
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||
Sbjct 427 GAATCAGATCATAACTGAAGCAGAAGAATACAAGAAATCCTTCTATGAGAAAAGAGAGAA 486
Query 595 GACCATTGAGACCAACAAGACTGATAACCGTGAAAAGGAGAAGCTATACTGGGCTAACCA 654
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 487 GACCATTGAGACCAACAAGACTGATAACCGCGAAAAGGAGAAGCTATACTGGGCTAACCA 546
Query 655 AGAGAAGTTCCACAAAGAAGTTGACAAGCATTACTGGAAAGCAATTGCAGAGCTAATCCC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGAGAAGTTCCACAAAGAAGTTGACAAGCATTACTGGAAAGCAATTGCAGAGCTAATCCC 606
Query 715 TCGTGAGGTTCCCAACATTGAGAAAAAGAGAGGGAAAAAGGATCCGGACAAGAAACCATC 774
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 607 GCGTGAGGTTCCCAACATCGAGAAGAAGAGAGGGAAAAAGGATCCGGACAAGAAACCATC 666
Query 775 AGTGAATGTTATTCAGGGTCCTAAACCTGGGAAGCCAACTGATCTAGGGAGAATGAGGCA 834
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 667 AGTGAATGTTATCCAGGGTCCTAAACCTGGGAAGCCAACTGACCTAGGGAGAATGAGACA 726
Query 835 GATATTCTTGAAGCTCAAGACAAATCCCCCACCTCACATGATGCCGCCTCCTCCTCCAGC 894
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 727 GATATTCTTGAAGCTCAAGACAAAACCCCCACCCCACATGATGCCGCCTCCTCCTCCAGC 786
Query 895 CAAAGATGCCAAAGATGGGAAGGATGCGAAAGATGGCAAAGATGCAAAAACTGGGAAAGA 954
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 787 CAAAGATGCCAAAGATGGGAAGGATGCCAAAGATGGCAAAGATGCAAAAGCTGGGAAAGA 846
Query 955 TGGGAAGGA-TGCAAAAGGA-GGGAAAGACGCTAAGGACTTAAAAGATGGGAAACCTGCA 1012
| ||||| | ||||| | |||||| | || | | | ||| || |
Sbjct 847 CGCCAAGGACTT-AAAAG-ATGGGAAA--C-CT--G--C--A---GAT------CC---A 883
Query 1013 GATCCAAAGGTGACAGAGGAAAAACGTCCTTCACCTGCCAAAGACGCAAGTGTTGAAACA 1072
| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 884 -A---A--GGTGACAGAGGAAAAACCTGCTTCACCTGCCAAAGACGCAAGTGTTGAAACA 937
Query 1073 GCGAAACCTGATGCTGCTGCCTCGGGAGAGGGAGAGAAACCTGTAGCTGTGACTGAGGCC 1132
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 938 GCGAAACCTGATGCTGCTGCCTCGGTAGAGGGAGAGAAACCTGTGGCTGTGACTGAGGCT 997
Query 1133 GAGGGAACCAAGGCGGAGTGAAGGGTCTTTAGTATTACTG 1172
|||||| ||||||| |||||||||||||||||||||||||
Sbjct 998 GAGGGAGCCAAGGCAGAGTGAAGGGTCTTTAGTATTACTG 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5