BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20770.1 Length=1549 Score E Sequences producing significant alignments: (Bits) Value Ahg480913 jgi|Araly1|480913|fgenesh2_kg.3__3614__AT2G20770.1 2230 0.0 > Ahg480913 jgi|Araly1|480913|fgenesh2_kg.3__3614__AT2G20770.1 Length=1481 Score = 2230 bits (1207), Expect = 0.0 Identities = 1365/1440 (95%), Gaps = 16/1440 (1%) Strand=Plus/Plus Query 50 GAAAGAGACGACAATGGCGGGTCGGTTCTTCGATAACGTGATGCCTGATTTCGTGAAGGA 109 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 19 GAAAGAGACAACAATGGCGGATCGGTTCTTCGATAACGTGATGCCTGATTTCGTGAAGGA 78 Query 110 GAAGGAAAGTGTATCTGGAGGAGATACGCTTAGGAATCTGCTTGCTATGCCGTATTCGTC 169 ||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 79 GAAGGAAAGTGAATCTGGAGGAGATTCGCTTAGGAATCTGCTCGCTATGCCGTATTCGTC 138 Query 170 TCTCTCGCAGCAGCTCAAGCGGTCCGCTTTGGATCTCAAAGAAACCGTAGTGATTGAAAC 229 |||||||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| Sbjct 139 TCTCTCGCAGCAGCTCAAACGATCCGCTTTGGATCTCAAGGAAACTGTAGTGATGGAAAC 198 Query 230 TTGGGGTTTTAGTGGACAGACTGTTGAAGACTTCACTCTTTACTCTGGAACTCTTGGAGC 289 ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 199 TTGGGGTTTTAGTGGGCAGACTGTTGAAGACTTCAGTCTTTACTCTGGAACTCTTGGAGC 258 Query 290 TGCGTTTTTACTCTTTAGAGCTTATCAGGTTACTGGCAACGCCAACGATCTTTCCCTCTG 349 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || Sbjct 259 TGCGTTTTTACTCTTTAGAGCTTATCAGGTTACTGGAAACGCCAATGATCTTTCCCTTTG 318 Query 350 CTTGGAAATCGTCAAAGCTTGTGATACTGCTTCTGCTTCCTCAGGGGATGTTACTTTTCT 409 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 319 CTTGGAAATCGTCAAAGCTTGTGATGCTGCTTCTGCTTCCTCAGGGGATGTTACTTTTCT 378 Query 410 CTGTGGCCGAGCTGGTGTTTGTGGTCTTGGCGCTGTTGCAGCTAAGCTTTCTGGTGAGGA 469 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 379 CTGTGGCCGAGCTGGTGTTTGTGGTCTTGGCGCCGCTGCAGCTAAGCTTTCTGGTGAGGA 438 Query 470 AGATTTGCTCAATTACTATTTGG-GACAATTTCGTCTGATAAGACTATCTAGTGATCTTC 528 || ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 439 GGAGTTGCTCAATTACTATTTGGCG-CAATTTCGTCTGATAAGACTATCTAGTGATCTTC 497 Query 529 CTAACGAGCTTTTGTATGGAAGAGTTGGTTATCTATGGGCTTGTCTGTTTATCAACAAGT 588 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 498 CTAACGAGCTTTTGTATGGAAGAGTTGGTTATCTATGGGCTTGTTTGTTCATCAACAAGT 557 Query 589 ACATCGGCAAAGAAACTTTGTCTTCAGATACCATCCGCGAAGTTGCTCAGGAGATTATCA 648 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 558 ACATTGGCAAAGAAACTTTGTCTTCAGATACCATTCGCGAAGTTGCTCAGGAGATTATCA 617 Query 649 AGGAAGGAAGATCAATGGCTAAGAAAGGAAGCTCACCGCTTATGTTTGAATGGTATGGCA 708 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 AGGACGGAAGATCAATGGCTAAGAAAGGAAGCTCACCGCTTATGTTTGAATGGTATGGCA 677 Query 709 AAAGGTACTGGGGTGCAGCACATGGACTTGCTGGTATTATGCACGTATTGATGGATGTTC 768 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 678 AACGGTACTGGGGTGCAGCACATGGGCTTGCTGGTATTATGCACGTATTGATGGATGTTC 737 Query 769 AGCTGAAGCCTGACGAGGCAGAAGATGTGAAGGGAACCCTTAAGTATATGATCAAGAATC 828 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 738 AGCTGAAGCCTGACGAGGCAGAGGATGTGAAGGGAACCCTTAAGTATATGATCAAGAATC 797 Query 829 GGTTTCCAAGTGGAAATTACCCTGCTAGTGAAGAGGATAAGAAGAAAGATATTCTTGTGC 888 ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 798 GGTTTCCAAGTGGAAATTACCCTGCTAGTGAAGAGGATAGGAAGAAAGATGTCCTTGTGC 857 Query 889 ATTGGTGTCATGGAGCCCCTGGGATTGCCCTCACACTTGGGAAGGCGGCTGAGGTTTTTG 948 |||||||||||||||| ||||||||||| |||||||||| ||| || ||||||||||||| Sbjct 858 ATTGGTGTCATGGAGCTCCTGGGATTGCTCTCACACTTGTGAAAGCTGCTGAGGTTTTTG 917 Query 949 GGGAGAGAGAGTTTCTGGAAGCGAGTGCAGCTGCAGCAGAGGTGGTTTGGAACCGTGGAT 1008 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 918 GGGAGAGAGAGTTTCTGGAAGCGGGTGCAGCTGCAGCAGAGGTGGTTTGGAACCGTGGAT 977 Query 1009 TGCTCAAGCGCGTGGGGATCTGTCATGGAATAAGTGGGAACGCATATGTTTTTCT-TGCG 1067 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 978 TGCTCAAGCGGGTGGGGATCTGTCATGGAATAAGTGGGAATGCATATGTTTTTCTCT-CG 1036 Query 1068 CTTTACAGAGCTACGGGAAGGAGTGAGTATCTATACCGTGCAAAAGCCTTTGCCAGTTTC 1127 ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1037 CTTTACAGAGCTACGGGAATGAGTGAGTATCTGTACCGTGCAAAAGCCTTTGCCAGTTTT 1096 Query 1128 CTGCTTGATAGAGGCCCCAAGTTACTCTCAAAAGGAGAAATGCATGGAGGTGATAGTCCT 1187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1097 CTGCTTGATAGAGGCCCCAAGTTACTCTCAAAAGGAGAAATGCATGGAGGTGATAGTCCT 1156 Query 1188 TATTCCTTGTTTGAAGGCGTTGCAGGCATGGCCTATCTCTTCCTTGACATGGTCGACCCA 1247 |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| Sbjct 1157 TATTCCTTGTTTGAAGGCTTTGCAGGCATGGCCTATCTCTACCTTGACATGTTCGACCCA 1216 Query 1248 TCTGAAGCCAGGTTCCCAGGTTACGAGCTTTAAACTTCTTGATCGATAACAATCTCC--- 1304 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1217 TCTCAAGCCAGGTTCCCAGGTTACGAGCTTTAAACTTCTAGATCGATAACAATCTCCATA 1276 Query 1305 -----GTCCATCAAATCCTTCTCTCTTGTTATGGAGGATGCACAAGGTAAGAGAGGGTGT 1359 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1277 CTTTTGTCCATCAAATCCTTATCTCTTGTTATGGAGGAGGCACAAGGTAAGAGAGGGTGT 1336 Query 1360 GAGTGTATGTGTGTTTAGTACTAGCAAAATCTTCTTGTTGTT-T--GATGGTGAATAAGT 1416 | || | |||||||||| ||||||||||||||| |||||||| | |||||||||| ||| Sbjct 1337 GTGTATGTGTGTGTTTACTACTAGCAAAATCTTGTTGTTGTTGTTTGATGGTGAATCAGT 1396 Query 1417 TTGAGTTGATATATAGCCGAACTGTCCGGAGAGCCTGTAACTTTATGAGTGTTAGAAGGA 1476 |||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1397 TTGAGTTGATATCTATTGGAACTGTCCGGAGAGCCTGTAACTTTATGA-TGTTAGAAGGA 1455 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58011443135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5