BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20770.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480913 jgi|Araly1|480913|fgenesh2_kg.3__3614__AT2G20770.1 2230 0.0
> Ahg480913 jgi|Araly1|480913|fgenesh2_kg.3__3614__AT2G20770.1
Length=1481
Score = 2230 bits (1207), Expect = 0.0
Identities = 1365/1440 (95%), Gaps = 16/1440 (1%)
Strand=Plus/Plus
Query 50 GAAAGAGACGACAATGGCGGGTCGGTTCTTCGATAACGTGATGCCTGATTTCGTGAAGGA 109
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 19 GAAAGAGACAACAATGGCGGATCGGTTCTTCGATAACGTGATGCCTGATTTCGTGAAGGA 78
Query 110 GAAGGAAAGTGTATCTGGAGGAGATACGCTTAGGAATCTGCTTGCTATGCCGTATTCGTC 169
||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 79 GAAGGAAAGTGAATCTGGAGGAGATTCGCTTAGGAATCTGCTCGCTATGCCGTATTCGTC 138
Query 170 TCTCTCGCAGCAGCTCAAGCGGTCCGCTTTGGATCTCAAAGAAACCGTAGTGATTGAAAC 229
|||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |||||
Sbjct 139 TCTCTCGCAGCAGCTCAAACGATCCGCTTTGGATCTCAAGGAAACTGTAGTGATGGAAAC 198
Query 230 TTGGGGTTTTAGTGGACAGACTGTTGAAGACTTCACTCTTTACTCTGGAACTCTTGGAGC 289
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 199 TTGGGGTTTTAGTGGGCAGACTGTTGAAGACTTCAGTCTTTACTCTGGAACTCTTGGAGC 258
Query 290 TGCGTTTTTACTCTTTAGAGCTTATCAGGTTACTGGCAACGCCAACGATCTTTCCCTCTG 349
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 259 TGCGTTTTTACTCTTTAGAGCTTATCAGGTTACTGGAAACGCCAATGATCTTTCCCTTTG 318
Query 350 CTTGGAAATCGTCAAAGCTTGTGATACTGCTTCTGCTTCCTCAGGGGATGTTACTTTTCT 409
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 319 CTTGGAAATCGTCAAAGCTTGTGATGCTGCTTCTGCTTCCTCAGGGGATGTTACTTTTCT 378
Query 410 CTGTGGCCGAGCTGGTGTTTGTGGTCTTGGCGCTGTTGCAGCTAAGCTTTCTGGTGAGGA 469
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 379 CTGTGGCCGAGCTGGTGTTTGTGGTCTTGGCGCCGCTGCAGCTAAGCTTTCTGGTGAGGA 438
Query 470 AGATTTGCTCAATTACTATTTGG-GACAATTTCGTCTGATAAGACTATCTAGTGATCTTC 528
|| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 439 GGAGTTGCTCAATTACTATTTGGCG-CAATTTCGTCTGATAAGACTATCTAGTGATCTTC 497
Query 529 CTAACGAGCTTTTGTATGGAAGAGTTGGTTATCTATGGGCTTGTCTGTTTATCAACAAGT 588
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 498 CTAACGAGCTTTTGTATGGAAGAGTTGGTTATCTATGGGCTTGTTTGTTCATCAACAAGT 557
Query 589 ACATCGGCAAAGAAACTTTGTCTTCAGATACCATCCGCGAAGTTGCTCAGGAGATTATCA 648
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 558 ACATTGGCAAAGAAACTTTGTCTTCAGATACCATTCGCGAAGTTGCTCAGGAGATTATCA 617
Query 649 AGGAAGGAAGATCAATGGCTAAGAAAGGAAGCTCACCGCTTATGTTTGAATGGTATGGCA 708
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGGACGGAAGATCAATGGCTAAGAAAGGAAGCTCACCGCTTATGTTTGAATGGTATGGCA 677
Query 709 AAAGGTACTGGGGTGCAGCACATGGACTTGCTGGTATTATGCACGTATTGATGGATGTTC 768
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 678 AACGGTACTGGGGTGCAGCACATGGGCTTGCTGGTATTATGCACGTATTGATGGATGTTC 737
Query 769 AGCTGAAGCCTGACGAGGCAGAAGATGTGAAGGGAACCCTTAAGTATATGATCAAGAATC 828
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 738 AGCTGAAGCCTGACGAGGCAGAGGATGTGAAGGGAACCCTTAAGTATATGATCAAGAATC 797
Query 829 GGTTTCCAAGTGGAAATTACCCTGCTAGTGAAGAGGATAAGAAGAAAGATATTCTTGTGC 888
||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 798 GGTTTCCAAGTGGAAATTACCCTGCTAGTGAAGAGGATAGGAAGAAAGATGTCCTTGTGC 857
Query 889 ATTGGTGTCATGGAGCCCCTGGGATTGCCCTCACACTTGGGAAGGCGGCTGAGGTTTTTG 948
|||||||||||||||| ||||||||||| |||||||||| ||| || |||||||||||||
Sbjct 858 ATTGGTGTCATGGAGCTCCTGGGATTGCTCTCACACTTGTGAAAGCTGCTGAGGTTTTTG 917
Query 949 GGGAGAGAGAGTTTCTGGAAGCGAGTGCAGCTGCAGCAGAGGTGGTTTGGAACCGTGGAT 1008
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 918 GGGAGAGAGAGTTTCTGGAAGCGGGTGCAGCTGCAGCAGAGGTGGTTTGGAACCGTGGAT 977
Query 1009 TGCTCAAGCGCGTGGGGATCTGTCATGGAATAAGTGGGAACGCATATGTTTTTCT-TGCG 1067
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 978 TGCTCAAGCGGGTGGGGATCTGTCATGGAATAAGTGGGAATGCATATGTTTTTCTCT-CG 1036
Query 1068 CTTTACAGAGCTACGGGAAGGAGTGAGTATCTATACCGTGCAAAAGCCTTTGCCAGTTTC 1127
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1037 CTTTACAGAGCTACGGGAATGAGTGAGTATCTGTACCGTGCAAAAGCCTTTGCCAGTTTT 1096
Query 1128 CTGCTTGATAGAGGCCCCAAGTTACTCTCAAAAGGAGAAATGCATGGAGGTGATAGTCCT 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTGCTTGATAGAGGCCCCAAGTTACTCTCAAAAGGAGAAATGCATGGAGGTGATAGTCCT 1156
Query 1188 TATTCCTTGTTTGAAGGCGTTGCAGGCATGGCCTATCTCTTCCTTGACATGGTCGACCCA 1247
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1157 TATTCCTTGTTTGAAGGCTTTGCAGGCATGGCCTATCTCTACCTTGACATGTTCGACCCA 1216
Query 1248 TCTGAAGCCAGGTTCCCAGGTTACGAGCTTTAAACTTCTTGATCGATAACAATCTCC--- 1304
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1217 TCTCAAGCCAGGTTCCCAGGTTACGAGCTTTAAACTTCTAGATCGATAACAATCTCCATA 1276
Query 1305 -----GTCCATCAAATCCTTCTCTCTTGTTATGGAGGATGCACAAGGTAAGAGAGGGTGT 1359
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1277 CTTTTGTCCATCAAATCCTTATCTCTTGTTATGGAGGAGGCACAAGGTAAGAGAGGGTGT 1336
Query 1360 GAGTGTATGTGTGTTTAGTACTAGCAAAATCTTCTTGTTGTT-T--GATGGTGAATAAGT 1416
| || | |||||||||| ||||||||||||||| |||||||| | |||||||||| |||
Sbjct 1337 GTGTATGTGTGTGTTTACTACTAGCAAAATCTTGTTGTTGTTGTTTGATGGTGAATCAGT 1396
Query 1417 TTGAGTTGATATATAGCCGAACTGTCCGGAGAGCCTGTAACTTTATGAGTGTTAGAAGGA 1476
|||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1397 TTGAGTTGATATCTATTGGAACTGTCCGGAGAGCCTGTAACTTTATGA-TGTTAGAAGGA 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5