BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20780.1
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480914 jgi|Araly1|480914|fgenesh2_kg.3__3615__AT2G20780.1 3059 0.0
> Ahg480914 jgi|Araly1|480914|fgenesh2_kg.3__3615__AT2G20780.1
Length=1995
Score = 3059 bits (1656), Expect = 0.0
Identities = 1911/2029 (94%), Gaps = 37/2029 (2%)
Strand=Plus/Plus
Query 39 TTGGATTACCTCATTAGAAAATTCCACCAATTTGGTCAAATAGAGACGATGAGATTTCTA 98
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 1 TTGGATTACCTCATTAGAAAATT-CACCAATTTGGTCAAATAGAGACGATGAAATTTTTA 59
Query 99 AGAAGTCTCTCCGGTTCAGATCTGGTCATCTAAAGCCCTTCTTCCGAGATCTACGACTTT 158
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 ACAAGTCTCTCCGGTTCAGATCTAATCATCTAAAGCCCTTCTTCCGAGATCTACGACTTT 119
Query 159 -CTTCCTCAAGTCGTTGTCTGAATTCTCtttttttCCGAAAACAGACACCACCTGAGTCT 217
||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 120 ACTT-CTCAAGTCGTTGTCTGAATTCTC--TCTTTCCGAAAACGGACACCACCTGAGTCT 176
Query 218 GCTGTCTGAAGCCTCGGCGGAGGGAGATGATGAAGAATCTTCCGGAGGTTGGTAATGGCG 277
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||
Sbjct 177 GCTGTCTGAAGCCTCGGCGGAGGGAGATGAT---GAATCTGCCGGAGGTTGGAAATGGCG 233
Query 278 GTGGCTCGGGTTTTCCGGCGGTCTCTGTCGGAAATAAGAAGAATAAGTATCAGAGAATGG 337
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GTGGCTCTGGTTTTCCGGCGGTCTCTGTCGGAAATAAGAAGAATAAGTATCAGAGAATGG 293
Query 338 ACTCCGACGCGGAGGAATCGCAGAATCATCGTGAAGCAGAGGCTAGAAACAGTAGAACCA 397
||||||||||||| |||| | ||| | ||||||||||||||||||||||||||| |
Sbjct 294 ACTCCGACGCGGA-GAAT--C---ATC-T--TGAAGCAGAGGCTAGAAACAGTAGAACTA 344
Query 398 GAAAATACGTTATGGCTTGTGCCTTTTTTGCATCCTTGAACAATGTTCTTCTCGGCTACG 457
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 345 GGAAATACGTTATGGCTTGTGCTTTTTTTGCATCGTTGAACAATGTTCTTCTCGGCTACG 404
Query 458 ATGTTGGGGTAATGAGCGGTGCGGTGTTGTTCATACAGCAGGATCTCAAAATAACGGAGG 517
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 405 ATGTTGGGGTAATGAGCGGTGCGGTGTTGTTCATACAGCAGGATCTCAATATAACGGAGG 464
Query 518 TGCAGACGGAAGTGCTCATTGGTAGCCTTAGCATCATCTCACTCTTTGGCAGCTTAGCCG 577
||||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||
Sbjct 465 TGCAGACGGAAGTTCTCATTGGTAGCCTCAGCATTATTTCACTCTTCGGCAGCTTAGCCG 524
Query 578 GCGGCAGAACCTCTGACTCTATCGGTAGAAAATGGACCATGGCCTTGGCTGCTCTCGTCT 637
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GCGGCAGAACCTCTGACTCCATCGGTAGAAAATGGACCATGGCCTTGGCTGCTCTCGTCT 584
Query 638 TCCAGACTGGTGCTGCCGTGATGGCTGTCGCTCCGTCTTTCGAGGTTTTGATGATAGGGA 697
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 585 TTCAGACTGGTGCTGCGGTGATGGCTGTCGCTCCGTCTTTCGAGGTTTTGATGATCGGAA 644
Query 698 GAACTTTAGCCGGCATTGGGATTGGGCTTGGTGTCATGATCGCTCCTGTCTACATCGCCG 757
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 645 GAACTTTAGCCGGCATTGGGATTGGACTTGGTGTCATGATCGCGCCTGTCTACATCGCCG 704
Query 758 AGATATCCCCCACCGTAGCTAGAGGATTTTTCACTTCGTTCCCTGAGATCTTCATAAATC 817
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AGATATCCCCTACTGTAGCCAGAGGATTTTTCACTTCGTTCCCTGAGATCTTCATAAATC 764
Query 818 TAGGGATCTTGCTGGGCTATGTTTCGAACTACGCTTTCTCGGGGCTTTCCGTGCATATCA 877
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TAGGGATCTTGCTAGGCTATGTTTCGAACTACGCTTTCTCGGGGCTTTCCGTGCATATCA 824
Query 878 GCTGGAGGATCATGCTTGCAGTTGGGATTCTTCCTTCGGTGTTCATAGGATTTGCGCTGT 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GCTGGAGGATCATGCTTGCAGTTGGGATTCTTCCTTCGGTGTTCATAGGATTTGCGCTGT 884
Query 938 GTGTGATCCCTGAGTCGCCGAGGTGGCTGGTGATGAAAGGCCGAGTGGACAGTGCACGAG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GTGTGATCCCTGAGTCGCCGAGGTGGCTGGTGATGAAAGGCCGAGTGGACAGTGCACGAG 944
Query 998 AGGTGCTCATGAAAACGAATGAGCGAGATGACGAAGCGGAAGAGCGGCTTGCAGAGATAC 1057
||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 945 AGGTGCTTATGAAAACGAATGAGCGAGATGATGAAGTAGAAGAGCGGCTTGCAGAGATAC 1004
Query 1058 AACTGGCGGCTGCACATACAGAAGGCAGCGAGGACAGGCCCGTGTGGCGTGAGCTTCTTA 1117
|||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 1005 AACTGGCGGCTGCACATACAGAAGGCAGCGAGGAGAGACCGGTGTGGCGTGAGCTTCTAA 1064
Query 1118 GCCCATCTCCTGTTGTACGGAAAATGCTGATTGTTGGATTTGGAATCCAGTGTTTCCAGC 1177
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1065 GCCCATCTCCTGTTGTACGGAAAATGCTGATTGTTGGATTTGGGATCCAATGTTTCCAGC 1124
Query 1178 AGATCACAGGAATTGACGCCACAGTCTACTATAGTCCAGAGATCCTGAAAGAGGCTGGGA 1237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGATCACAGGAATCGACGCCACAGTCTACTATAGTCCAGAGATCCTGAAAGAGGCTGGGA 1184
Query 1238 TACAAGACGAGACCAAACTGCTCGCTGCAACTGTCGCTGTTGGTGTCACGAAAACAGTGT 1297
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1185 TACAAGACGAGACCAAACTGCTCGCTGCAACTGTCGCTGTTGGGGTCACGAAAACAGTGT 1244
Query 1298 TCATACTATTTGCCACCTTCCTGATTGATAGTGTTGGCCGGAAACCGCTGCTTTATGTGA 1357
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1245 TCATACTATTTGCCACCTTCCTGATCGATAGCGTTGGCCGGAAACCGCTGCTTTATGTGA 1304
Query 1358 GCACAATAGGAATGACTCTGTGTCTCTTTTGTCTAAGCTTTACGCTCACATTCCTCGGCC 1417
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1305 GCACAATTGGAATGACTCTGTGTCTCTTTTGTCTAAGCTTCACGCTCACATTCCTCGGCC 1364
Query 1418 AAGGAACGCTTGGGATAACCTTGGCGCTTCTCTTTGTTTGTGGAAACGTTGCCTTCTTCT 1477
||||||||||||||||||||||||| ||||||||||||||||| || || || |||||||
Sbjct 1365 AAGGAACGCTTGGGATAACCTTGGCTCTTCTCTTTGTTTGTGGGAATGTAGCTTTCTTCT 1424
Query 1478 CCATAGGAATGGGACCTGTTTGCTGGGTCTTGACATCAGAGATCTTTCCATTACGATTAA 1537
| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1425 CTATAGGGATGGGACCTGTTTGCTGGGTCTTGACGTCAGAGATCTTCCCATTACGGCTAA 1484
Query 1538 GAGCCCAGGCATCTGCGCTTGGGGCGGTTGGGAACAGGGTGTGCAGCGGTCTGGTGGCCA 1597
|||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1485 GAGCCCAGGCCTCAGCGCTTGGGGCGGTCGGAAACAGGGTGTGCAGCGGTCTGGTGGCCA 1544
Query 1598 TGTCCTTCCTCTCTGTGTCACGTGCCATCACTGTTGGAGGAACCTTCTTCGTTTTCTCCC 1657
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1545 TGTCCTTCCTCTCTGTCTCACGTGCCATTACTGTTGGAGGAACCTTCTTCGTTTTCTCCC 1604
Query 1658 TCGTGTCTGCACTCTCAGTTATCTTCGTGTATGTGCTAGTCCCCGAGACAAGCGGGAAGT 1717
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 TCGTGTCTGCACTCTCGGTTATCTTCGTGTATGTGCTAGTCCCCGAGACAAGCGGGAAGT 1664
Query 1718 CACTGGAGCAGATAGAGTTGATGTTTCAGGGTGGGCTGGAAAGAAAAGACGGTGAAGTTG 1777
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 CGCTGGAGCAGATAGAGTTGATGTTTCAGGGTGGGCTGGAAAGAAAAGACGGTGAAGTTG 1724
Query 1778 AGCTTGGAGATGCTGAGCGTCTTGTGCGCAAGGAACAGGAGTTTTGAA-TTGATCATGTT 1836
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1725 AGCTTGGAGATGCTGAGCGTCTTGTGCGCAAGGAACAGGAGTTTTGAAATTGAACATGTT 1784
Query 1837 AAAGTAGAAGAGGCAGAAGTGAAAAGATACTCTTATGGTGTTCTGTTCTTGCATTAGATC 1896
||||||||||||||||||| | || | | ||||||||||||||| |||||||
Sbjct 1785 AAAGTAGAAGAGGCAGAAG--A---GA-A-T-----GGTGTTCTGTTCTTGTTTTAGATC 1832
Query 1897 CAAAGAACGTAAGATAGATTTTGTAAGTGCGTTTGATGATGGTATAGACCCAGTGCATAT 1956
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1833 CAAAGAACGTAAGACAGATTTTGTAAGTGCGTTTGATGATCGTATAGACCCAATGCATAT 1892
Query 1957 TCCAAAGAAACCAACTGCTCTGtttttttGTTCCTTGTTTCAAGAAGAAACCATGTGA-T 2015
||||||||| ||| ||||||||||||| ||||||||||| ||||||||| |||| | |
Sbjct 1893 TCCAAAGAAGGCAAATGCTCTGTTTTTTA-TTCCTTGTTTCGAGAAGAAACTATGTCAAT 1951
Query 2016 ACTCAACTCAAAAGACAATATATACAGAAATGACAGAACCTTTGTGTTC 2064
||||| ||||||| |||||| |||||| ||||||||||||||||||
Sbjct 1952 ACTCA-CTCAAAATACAATA----CAGAAAGGACAGAACCTTTGTGTTC 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78161182740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5