BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20790.1
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931960 jgi|Araly1|931960|scaffold_304417.1 2929 0.0
> Ahg931960 jgi|Araly1|931960|scaffold_304417.1
Length=1885
Score = 2929 bits (1586), Expect = 0.0
Identities = 1782/1873 (95%), Gaps = 28/1873 (1%)
Strand=Plus/Plus
Query 127 CAATTATGCCCTCTGGTTGCAGTATCAGAGCTCTCTGGATCATCAACAATCAAGACACTG 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 19 CAATTATGCCCTCTGGTTGCAGTATCAGAGCTCTCTGGATCATCAACAATCAAGACGCTG 78
Query 187 TTGTTTTCTCCAGGAGGTTTCCGGTCGTCGAGAAGCAATGGTGCTCCGCTTACAAGACGG 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 79 TTGTTTTCTCCAGGAGGTTTCCGGTCGTCGAGAAGCAATGGTGCTCCGCTTACAAGTCGG 138
Query 247 AGAACGAAAACACTGGATTAGATCTTCCTAGACTTCCCACTGATCAACAAATCTCCGATT 306
| |||| ||| || | | ||||||||||||||||||||| ||||||||| |
Sbjct 139 AAAACG-AAA-AC--------A-C-TCCTAGACTTCCCACTGATCAGCAAATCTCCAACG 186
Query 307 CTTTTACTCGAAGAAAGAGACGGGAAGGCTCTACTCGTGGATATGGTATACGTGTTGCTC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CTTTTACTCGAAGAAAGAGACGGGAAGGCTCTACTCGTGGATATGGTATACGTGTTGCTC 246
Query 367 AATCCACCAAAGGATCGGATTCTTGGGTTGATGATCCCATCACTCGTCATATTATCAGCC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AATCCACCAAAGGATCGGATTCTTGGGTTGATGATCCCATCACTCGTCATATTATCAGCC 306
Query 427 TTTGCTTAACCGAAGAAgatgatgatgatgatg-a--tg------a--A-AGGAACATTC 474
||||||||| ||||||||||||||||||||||| | || | | ||||||||||
Sbjct 307 TTTGCTTAAGCGAAGAAGATGATGATGATGATGAATCTGATAAAAACGAGAGGAACATTC 366
Query 475 TCTGGCCTATTGCTCTGCATACCAAAGCGCTTTACTCTATCCTCGTCTTGCCTTTGGTTG 534
||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 367 TCTGGCCTATTGCCCTGCACACTAAAGCCCTTTACTCTATCCTCGTCTTGCCTTTGGTTG 426
Query 535 AGCCAAAGGAGATGAAGGATTACGTCAAGCTT-TGTAGGAGATCTGATTGTGGACCAGCT 593
|||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||
Sbjct 427 AGCCAAAGGAGATGAAAGATTACGTCAAG-TTATGTAGGAGATCTGATTGTGGACCAGCT 485
Query 594 GTTGGTGAAGATTTGAGTTTATCATCTCTCTTGCTTAACATTTCATCCATTACAGGGGCT 653
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 486 GTTGGTGAAGATTTGAGTTTGTCATCTCTCTTACTTAACATTTCATCCATTACAGGGGCT 545
Query 654 TTTATGGTGGCTCATGCATTTGGTGACATCATTTCTGGTGATACAGTGGAACCTGAGGTT 713
|| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 546 TTCATGGTGGCTCATGCATTTGGTGACATCGTTTCTGGTGATACTGTGGAACCTGAGGTT 605
Query 714 GTTGTAAGTGTGTCACCATCAGTTGGGGGGTTGTTTGATTCACTAACTGGAAGCATTGGT 773
|||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 606 GTTGTAAGTGCGTCTCCATCAGTTGGTGGGTTGTTTGATTCAATAACTGGAAGCATTGGT 665
Query 774 ATCTCATCGAGGGCTAAACCTGTAGCTGCACCTG-TTGCATCATCTAACCCGTCTGGAGC 832
|||||||| ||||| ||||| ||| ||||||| | ||||||| ||| ||||||||||||
Sbjct 666 ATCTCATCTAGGGCAAAACCCGTACCTGCACC-GCTTGCATCTTCTTCCCCGTCTGGAGC 724
Query 833 TGCAATAACTGGAGCTACAGCATCGGATGCTCCCAAAGCAGGGTCAAGATTACTGGATAG 892
||||| ||| ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 725 TGCAACAACAGGAGCCACAGCATCGGATGCTCCCAAAGCAGGGTCGAGGTTACTGGATAG 784
Query 893 AGATTTACTTAGAAACTTTATTGCTACTGCTATGCCGTTTGGTACCCCATTAGACCTCAG 952
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 785 AGATTTACTTAGAAATTTTATCGCTACTGCTATGCCGTTTGGTACCCCATTAGACCTCAG 844
Query 953 CTTGTCTAATATATCTGCTATGAAAGCGAATGGTTTTTCCTCTGCTGATCCTCCTCCCCA 1012
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 845 CTTGTCTAATATATTTGCTATGAAAGCGAATGGCTTTTCCACTGCTGATCCTCCTCCCCA 904
Query 1013 AGAACTTAAGCAACCAGCATGGAAGCCATACCTGTACAAAGGAAAGCAAAGGCTATTGTT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGAACTTAAGCAACCAGCATGGAAGCCATACCTGTACAAAGGAAAGCAAAGGCTATTGTT 964
Query 1073 CACAATTCATGAGACCGTTAGCGCTGCAATGTACGACCGCGATGAGATTCCTGATAATGT 1132
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 965 CACAATTCATGAGACCGTTAACGCTGCAATGTACGACCGCGATGAGATTCCTGATAATGT 1024
Query 1133 ATCTGTTGCGGGACAGATAAACTGTCGGGCAGAACTAGAAGGGCTGCCTGATGTGTCGTT 1192
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1025 ATCTGTTGCAGGACAGATAAACTGTCGGGCAGAGCTAGAAGGGCTGCCTGATGTGTCGTT 1084
Query 1193 TCCTCTAGCAGGGCTGAGTACAGCCCATATCGAAGCTATATCTTTCCATCCATGTGCCCA 1252
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1085 TCCTCTAGCAGGGCTGAGTACAGCCCACATCGAAGCTATATCTTTCCATCCATGTGCTCA 1144
Query 1253 AGTTCCAGCACATGGGATTGACAAGCAGAACATTGTTTTCCAGCCTCCCTTGGGTAACTT 1312
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGTTCCAGCACATGGGATCGACAAGCAGAACATTGTTTTCCAGCCTCCCTTGGGTAACTT 1204
Query 1313 TGTTCTCATGCGATACCAGGCAGGTTGTGGACTCGGACCACCAGTGAAAGGGTTCTATCA 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TGTTCTCATGCGATACCAGGCAGGTTGTGGACTCGGACCACCAGTGAAAGGGTTCTATCA 1264
Query 1373 GCTATCAATGGTTTCAGAAGACGAGGGTGCATTCCTCTTCAAGGTGCACCTCATGGAAGG 1432
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GCTGTCAATGGTTTCAGAAGACGAGGGTGCATTCCTCTTCAAGGTGCACCTCATGGAAGG 1324
Query 1433 TTACAAGGCTCCTCTGTCAATGGAATTTTGCACTATTACTATGCCCTTTCCACGGAGACG 1492
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1325 TTACAAGGCTCCTCTGTCAATGGAATTCTGCACTATTACTATGCCCTTTCCACGGAGACG 1384
Query 1493 GATAGTGGCATTTGATGGGACTCCGTCAGCTGGGACTGTTTTAACCACAGAACACTCTGT 1552
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1385 GATAGTGGCATTTGATGGGACTCCATCAGCTGGGACTGTTTTAACCACAGAGCACTCTGT 1444
Query 1553 TGAGTGGAGGATTCTGGGCAGCGGACGTAGTCTTTCTGGGAAAAGCCTTGAGGCAACTTT 1612
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TGAGTGGAGGATTCTGGGAAGCGGACGTAGTCTTTCTGGGAAAAGCCTTGAGGCAACTTT 1504
Query 1613 CCCTGGGACAATCAAGTTTAGTCCATTGCAGAGCAGAAGAAAAGGGGATGGGGATGATGA 1672
||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 1505 CCCCGGGACAATCAAGTTTAGTCCATTGCAGAGTAGGAGAAGAGGGGATGGGGATGATGA 1564
Query 1673 AGAGAGTGAGGATGAGAGCGCTGAGAATGTGGTGAACGTGGAGGACTTCTTGGTGCAGAA 1732
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1565 AGAGAGTGAGGATGAGAGCGTTGAGAATGTGGTGAACGTGGAGGACTTCTTGGTGCAGAA 1624
Query 1733 AATGAACAAGGATCTCCCAGCAGCTGAGTTGGAGGAACCGTTCTGCTGGCAAGCCTATGA 1792
||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 1625 AATGAACAAGGATCTCCCAGCAGTTGAGTTGGAGGAACCGCTCTGTTGGCAAGCCTATGA 1684
Query 1793 CTATGCCAAGGTCTCGTTCAAGATTGTCGGGGCATCTGTATCTCGAATGTCAATCGACAC 1852
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1685 TTATGCCAAGGTCTCGTTCAAAATTGTCGGGGCATCTGTATCTCGAATGTCAATCGACAC 1744
Query 1853 AAAATCAGTCAATATCTACCCAACCACAAAGTCACCGGTTGAGTTTTCTGCTCAGGTGAC 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 AAAATCAGTCAATATCTACCCAACCACAAAGTCACCGGTTGAGTTTTCTGCTCAGGTGAC 1804
Query 1913 TTCAGGGGATTATATATTGTGGAACACATTGGGGAAAGCTCCATCAGCAGCCGTCGTGTG 1972
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1805 TTCAGGGGATTATATATTGTGGAACACATTGGGGAAGGCTCCATCAGCAGCCGTCGTGTA 1864
Query 1973 ATTTCCCCAAGTC 1985
||| |||||||||
Sbjct 1865 ATTCCCCCAAGTC 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83074824345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5