BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20815.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480920 jgi|Araly1|480920|fgenesh2_kg.3__3621__AT2G20815.1 2146 0.0
> Ahg480920 jgi|Araly1|480920|fgenesh2_kg.3__3621__AT2G20815.1
Length=1445
Score = 2146 bits (1162), Expect = 0.0
Identities = 1358/1451 (94%), Gaps = 20/1451 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAGCTGTGAGCATGAACTACTCAAAACAAGAAGAGGAAAGTCCCGCGAGGTT-AG 59
|||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||
Sbjct 1 ATGAAGAGCTGTGAGCAT---CTACTCAAACCAAGAAGAGGAAAGTCCCGCGA-GTTAAG 56
Query 60 TTCACGTTTTCTCTCTTCGCCGTCTGCATCTTCTTCTCCTAACCGCAGAAACTCCACTTC 119
||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 57 TTCACGTTTTCTCTCCTCTCCGTCTGCATTTTCTTCTCCTAACCGCAGAAACTCCACTTC 116
Query 120 TAATTCA--T--C--GAGAGATGATCAGAACAACAACGGGGTAAAAGGTCATCTAGGCTT 173
||||||| | | |||||||||||||||||||||||| | |||| |||||| ||| |
Sbjct 117 TAATTCATCTACCAAGAGAGATGATCAGAACAACAACGGTCTGAAAGTTCATCTCGGCCT 176
Query 174 GAAAAAGCATGATAGGATGTCAGATGGCACACGGGTTTGTTTCGGGTTACCAAACCAAAG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAAAAAGCATGATAGGATGTCAGATGGCACACGGGTTTGTTTCGGGTTACCAAACCAAAG 236
Query 234 TAGCATAGAAGTTGACACAAAAGAAAATCGTATGCCTTCACCGTGGATCAATGATGAGGA 293
|||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 237 TAGCATAGAAGTTGACTCAAAAGAAAATCGTAGGCCTTCACCGTGGATGGATGATGAGGA 296
Query 294 TAACGTCATACTTCCTGGCAGATTTTCTGTTGATGAATGTGCATTGTACAGAGCATCATC 353
| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 TCATGTCATACTTCCTGGCAGATTTTCTGTTGATGAATGTACATTGTACAGAGCATCATC 356
Query 354 AAGGAGAAACTCATGCTCTCTGCTATATGAGTCCTTCAACGATGAAACAGACTCAGAGTT 413
||||||||||||||||||||| |||||||||||||| || |||||| |||| ||||||||
Sbjct 357 AAGGAGAAACTCATGCTCTCTACTATATGAGTCCTTAAATGATGAATCAGATTCAGAGTT 416
Query 414 GAGTGATGTGTCCTGTGCTTCAAGTCTTAGTACAAATCGTTCATCCTGGAACCATAAACC 473
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 417 GAGCGATGTGTCCTGTGCTTCAAGTCTTAGTACAAATCGTTCATCCCGGAACCATAATCC 476
Query 474 CGGTATCAAGGTCTCTTCTAAGTATCTGCATGATTTAACAGCTAAACCGAGCAAAGGCAA 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGGTATCAAGGTCTCTTCTAAGTATCTGCATGATTTAACAGCTAAACCGAGCAAAGGCAA 536
Query 534 CAACAA---GACCAAACTAAGGTCACAAGATGATTCACAGAGAACTAATAGCTCTAAGGG 590
|||||| ||||||| ||||||||||||| |||||||||||| ||||||||| || |||
Sbjct 537 CAACAATGTGACCAAAATAAGGTCACAAGAAGATTCACAGAGAGCTAATAGCTTTAGGGG 596
Query 591 CATTGAGAATA-GATTGCAGAGGAATAATTCAGTGTCCAGGTATGGAAGTTCGATGTCTC 649
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CATTGAGAATAGGA-TGAAGAGGAATAATTCAGTGTCCAGGTATGGAAGTTCGATGTCTC 655
Query 650 AGTGGGCTCTTTCACCAGGAAGGTCATTGGACACTCAGGCGGTGACAGTTCCAAGTTCAA 709
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 656 AGTGGGCACTTTCACCAGGAAGGTCATTGGACACCCAGGCAGTGACAGTTCCAAGTTCAA 715
Query 710 AACTGAAGCCTCCAAGAGGAAAAGGCGTGGGTAAACTAATCAACCTTGGTTTCGATTTCT 769
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AACTGAAGCCTCCAAGAGGCAAAGGCGTGGGTAAACTAATCAACCTTGGTTTCGATTTCT 775
Query 770 TCAGGAGCAAGAACAAGTCATCGCCCTTTACTTCACCACTAAAACCAAAGACATGTGACA 829
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCAGCAGCAAGAACAAGTCATCGCCCTTTACTTCACCACTAAAACCAAAGACATGTGACA 835
Query 830 CAGAATCTGCTCATCAGCTGAAGCTTATGAATAACCGGTTGCTTCAATGGAGGTTTGTCA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CAGAATCTGCTCATCAGCTGAAGCTTATGAATAACCGGTTGCTTCAATGGAGGTTTGTCA 895
Query 890 ATGCTAGAGCCTGTGATGTAAACAAGAACGTAGCCTCCCAAGAAAAGAATCAACTACTCT 949
|||||||||||| || || || ||| | ||||||||||||||||||||||||||||||||
Sbjct 896 ATGCTAGAGCCTCTGCTGCAAGCAATATCGTAGCCTCCCAAGAAAAGAATCAACTACTCT 955
Query 950 GTGCATGGGATACTCTTATCAAGTTAAATA-ATTTGGTTCTGCAAGAGAGAATCAAACTG 1008
|||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 956 GTGCATGGGATACTCTTACCAAGTTAAA-ACATTTGGTTCTGCAAGAGAGAATCAAACTG 1014
Query 1009 CAGAAGAAAAACCTGGAGATGAAGCTGAATTATGTGTTTCTTTCTCAAGTTAAGCATCTT 1068
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1015 CAGAAGAAAAACCTGGAGATGAAGCTGATTTATGTGCTTCTTTCTCAAGTTAAGCATCTT 1074
Query 1069 GAAGCTTGGGAGGACATGGAAATACAACACCTTTCATCTCTGTCCATAATCAGAGATTCC 1128
|||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||
Sbjct 1075 GAAGCTTGGGAGGACATGGAAAGACAACACCTTTCATCTCTATCCATGACCAGAGATTCC 1134
Query 1129 CTGCATTCTGTTCTTTCCAGGCTTCCCCTCAAAGAAGGCGCGAAGGTGAACTTGGAATCA 1188
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1135 CTGCATTCTGTTCTTTCTAGGCTTCCCCTCAAAGAAGGTGCAAAGGTGAACTTGGAATCA 1194
Query 1189 GCTGTCAGTATAATTAAGAATGCAGAAGCAGTCACTGATGCTATCATTTCAACTGTGGAT 1248
||||||| | | |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1195 GCTGTCACTTTGTTTAAGAATGCAGAAACAGTCACTGATGCTATCATTTCAACTGTGAAT 1254
Query 1249 GATT-ATGCTCCCACGATGGAGGGTATTGTTCCACTTGCTTCCCAACTAGCGGAAGTGGT 1307
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1255 -ATTTATGCTCCCACGATGGAGAGTATTGTTCCACTTGCTTCCCAACTAGCGGAAGTGGC 1313
Query 1308 TGTACAAGAGAAGTTGATGCTCGAGAAATGCCATGACCTTTTGAGAATGATTTCCGAGTT 1367
||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1314 CACACAAGAGAAACTGATGCTGGAGCAATGCCATGACCTTTTGAGAATGATTTCCGAGTT 1373
Query 1368 AGAGATGCAGGAGAGGAGCTTGAAATGCTGCTTCCTGATTCAACACAAACAGACTTTCGA 1427
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 1374 AGAGATGCAGGAGAGGAGCTTGAAGTGTTGCTTCCTGATTCAAAACAAACAGACTTTCGA 1433
Query 1428 TACAAATCTTC 1438
|| ||| ||||
Sbjct 1434 TATAAAACTTC 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5