BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20816.1

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931967 jgi|Araly1|931967|scaffold_304424.1                        448    3e-125


> Ahg931967 jgi|Araly1|931967|scaffold_304424.1
Length=461

 Score =  448 bits (242),  Expect = 3e-125
 Identities = 371/432 (86%), Gaps = 13/432 (3%)
 Strand=Plus/Plus

Query  113  AACCAATGACAACGTTAATTGACTCATACACTGCACAATGTTGAAAGTGTTTCAAAGTGA  172
            ||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||
Sbjct  16   AACCAATGACAACGTTAATCGACTCATACGCTGCACAATGTTGGAAGTGTCTCAAAGTGA  75

Query  173  GATATAG-AGAGTCACAAGAAGAGTACGAAAAGAATCAAAGTAAAACTCCGAAAAAAGTC  231
            ||||| | |||||| |||||| | |||||  | | || |||  |||| ||| || |||||
Sbjct  76   GATAT-GTAGAGTCCCAAGAAAAATACGAGGATATTCGAAGCGAAACACCG-AATAAGTC  133

Query  232  TTTTGAATGCAAGAGATGTGAAAAATCTAGAGATGTGGTTGTGAACTTTGATTCCCCTAT  291
            ||||||||||| ||| |||||| || || ||||||||| | |||||||||||||||||  
Sbjct  134  TTTTGAATGCAGGAGCTGTGAAGAACCTGGAGATGTGGATATGAACTTTGATTCCCCTGC  193

Query  292  TGTGCGTTGGTTTCAGGATGGACATGGTATACCCAACACCCCTCAAGGTTTGAAGAGGGT  351
            ||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| |
Sbjct  194  TGTGCGTTGGTTTCAAGATCGACATGGTATACCCAAAACCCCTCAAGGGTTGAAGAGGAT  253

Query  352  TTTGATCG-TCAGAAC-AAGCTGCGAGAAAGCCGATGTTTAATATGAAACATTAGCTCCT  409
            |||| | | || | || |||| ||||||||||||||||||| ||  |||||  |||||||
Sbjct  254  TTTGGTTGTTC-G-ACGAAGCGGCGAGAAAGCCGATGTTTATTACCAAACAGAAGCTCCT  311

Query  410  AAACGAAAGAGACTAAA-TACTGTGAAGAAAGTCACTAAGTTTATTGAAGACAATGAACA  468
            ||||||||||||||||| |  | | ||| | |||||||||||||||||||||||||||||
Sbjct  312  AAACGAAAGAGACTAAAGT-GTTTCAAGGACGTCACTAAGTTTATTGAAGACAATGAACA  370

Query  469  ATTCAAAGACATGAAGATTGAAGAGGTTTCTTTTACCGCACCCAAAC-AGCTGAA-AAGG  526
            |||||||||||||||||| ||||||||||||||| |||||||||||| |  |||| ||  
Sbjct  371  ATTCAAAGACATGAAGATAGAAGAGGTTTCTTTTGCCGCACCCAAACGAA-TGAAGAAAA  429

Query  527  AAAAAGTTCTAA  538
            ||||||| ||||
Sbjct  430  AAAAAGT-CTAA  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19611972746


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5