BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20816.1 Length=538 Score E Sequences producing significant alignments: (Bits) Value Ahg931967 jgi|Araly1|931967|scaffold_304424.1 448 3e-125 > Ahg931967 jgi|Araly1|931967|scaffold_304424.1 Length=461 Score = 448 bits (242), Expect = 3e-125 Identities = 371/432 (86%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 113 AACCAATGACAACGTTAATTGACTCATACACTGCACAATGTTGAAAGTGTTTCAAAGTGA 172 ||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||| Sbjct 16 AACCAATGACAACGTTAATCGACTCATACGCTGCACAATGTTGGAAGTGTCTCAAAGTGA 75 Query 173 GATATAG-AGAGTCACAAGAAGAGTACGAAAAGAATCAAAGTAAAACTCCGAAAAAAGTC 231 ||||| | |||||| |||||| | ||||| | | || ||| |||| ||| || ||||| Sbjct 76 GATAT-GTAGAGTCCCAAGAAAAATACGAGGATATTCGAAGCGAAACACCG-AATAAGTC 133 Query 232 TTTTGAATGCAAGAGATGTGAAAAATCTAGAGATGTGGTTGTGAACTTTGATTCCCCTAT 291 ||||||||||| ||| |||||| || || ||||||||| | ||||||||||||||||| Sbjct 134 TTTTGAATGCAGGAGCTGTGAAGAACCTGGAGATGTGGATATGAACTTTGATTCCCCTGC 193 Query 292 TGTGCGTTGGTTTCAGGATGGACATGGTATACCCAACACCCCTCAAGGTTTGAAGAGGGT 351 ||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| | Sbjct 194 TGTGCGTTGGTTTCAAGATCGACATGGTATACCCAAAACCCCTCAAGGGTTGAAGAGGAT 253 Query 352 TTTGATCG-TCAGAAC-AAGCTGCGAGAAAGCCGATGTTTAATATGAAACATTAGCTCCT 409 |||| | | || | || |||| ||||||||||||||||||| || ||||| ||||||| Sbjct 254 TTTGGTTGTTC-G-ACGAAGCGGCGAGAAAGCCGATGTTTATTACCAAACAGAAGCTCCT 311 Query 410 AAACGAAAGAGACTAAA-TACTGTGAAGAAAGTCACTAAGTTTATTGAAGACAATGAACA 468 ||||||||||||||||| | | | ||| | ||||||||||||||||||||||||||||| Sbjct 312 AAACGAAAGAGACTAAAGT-GTTTCAAGGACGTCACTAAGTTTATTGAAGACAATGAACA 370 Query 469 ATTCAAAGACATGAAGATTGAAGAGGTTTCTTTTACCGCACCCAAAC-AGCTGAA-AAGG 526 |||||||||||||||||| ||||||||||||||| |||||||||||| | |||| || Sbjct 371 ATTCAAAGACATGAAGATAGAAGAGGTTTCTTTTGCCGCACCCAAACGAA-TGAAGAAAA 429 Query 527 AAAAAGTTCTAA 538 ||||||| |||| Sbjct 430 AAAAAGT-CTAA 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19611972746 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5