BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20825.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480923 jgi|Araly1|480923|fgenesh2_kg.3__3624__AT2G20825.1 1219 0.0
> Ahg480923 jgi|Araly1|480923|fgenesh2_kg.3__3624__AT2G20825.1
Length=796
Score = 1219 bits (660), Expect = 0.0
Identities = 753/797 (94%), Gaps = 9/797 (1%)
Strand=Plus/Plus
Query 60 GTCCCGATCGGAGATGGAGAGAGAATGTGGGTCGAAGGAGTTGTTCAGCAAAGAGGAGCT 119
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 GTCCCGATCGGAGATGGAGAGAGAATGTGGGTCCAAGGAACTGTTCAGCAAAGAGGAGCT 60
Query 120 ACAAGAAATAAGTGGAGTCCATGTGGGAGACGATTACGTCGAGGTCATGTGTGGCTGCAC 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GCAAGAAATAAGTGGAGTCCATGTGGGAGACGATTACGTCGAGGTGATGTGTGGCTGCAC 120
Query 180 CAGCCACCGTTACGGAGACGCCGTTGCGAGGCTTAAGATATTTTCAGATGGAGAACTTCA 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGCCACCGTTACGGAGACGCCATTGCGAGGCTTAAGATATTTTCAGATGGAGAACTTCA 180
Query 240 AATCACCTGCCAATGCACTCCTGCTTGTCTCGAAGACAAGTTGACGCCTGCTGCCTTCGA 299
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 181 AATCACCTGCCAATGCACTCCCGCTTGCCTCGATGACAAGTTAACGCCTGCTGCCTTCGA 240
Query 300 GAAGCATTCTGAGAGAGAAACCTCTAGAAACTGGAGGAACAATGTTTGGGTGTTCATTGA 359
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 241 GAAGCATTCTGAGAGAGAAACCTCTAGAAACTGGAGGAACAATGTGTGGGTGTTTATCGA 300
Query 360 AGGAGACAAGGTTCCGCTTTCAAAGA-CAGTGTTGCTCAGATACTACAACAAAGCATTGA 418
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 301 GGGAGACAAGGTTCCACTTTCAAA-ATCAGTGTTGCTCAGATACTACAACAAAGCATTGA 359
Query 419 AGAACTCTAACGTATCGAAAGTCATTCATCGGGATGAGTTTGTTGGGTGCAGCACATGCG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 AGAACTCTAACGTATCGAAAGTCATTCATCGGGATGAGTTTGTTGGGTGCAGCAAATGCG 419
Query 479 GGAAGGAGAGGAGGTTCAGATTGAGGAGCAGAGGGGAATGCCGGATGCACCATGATGCAA 538
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 420 GGAAGGAGAGGAGGTTCAGGTTGAGGAGCAGAGGTGAATGCCGGATGCACCATGATGCAA 479
Query 539 TTGCTGAGCCTAATTGGAAGTGTTGCGATTACCCATACGACAAGATAACATGCGAGGAGG 598
| ||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||
Sbjct 480 TAGCTGAGCCTAATTGGAAGTGTTGTGATTATCCATTCAACAAGATAACATGCGAGGAGG 539
Query 599 AGGAAGAAAGAGGGAGCAGGAAAGTGTTCAGAGGTTGCACTCGCTCACCGTCCTGCAAAG 658
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 540 AGGAAGAAAGAGGGAGCAGGAAAGTGTTCAGAGGGTGCACTCGCTCTCCGTCTTGCAAAG 599
Query 659 GCTGCACTTCTTGCGTCTGCTTCGGCTGCAAGCTCTGCCGTTTCTCTGATTGTAACTGCC 718
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 600 GCTGCACGTCTTGCGTCTGCTTTGGTTGCAAGCTCTGCCGTTTCTCTGATTGTAACTGCC 659
Query 719 AGACTTGCCTCGATTTCACCACCAATGCCAAACCCATTTGACTTCATTTCTCTAACTTAT 778
||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||| |
Sbjct 660 AGACTTGCCTCGACTTCACCACCAACGCCCAACCCATTTGACTTCATCTCTCTAACTTCT 719
Query 779 TTAATTCTTCTGCAAAAACTTGTAATGTATG-------CTCTGCATTTTCTTTAATCAGT 831
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 720 TTAATTCTTCTGCAAAACCTTGTAATGTATGGTGGATGCTCTGCATTTTCTTTAATCAGT 779
Query 832 AGCTTGTTACACCTGTT 848
|||||||||||||||||
Sbjct 780 AGCTTGTTACACCTGTT 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5