BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20830.2
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319935 jgi|Araly1|319935|fgenesh1_pm.C_scaffold_3002951 2050 0.0
> Ahg319935 jgi|Araly1|319935|fgenesh1_pm.C_scaffold_3002951
Length=1296
Score = 2050 bits (1110), Expect = 0.0
Identities = 1235/1297 (95%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 152 ATGAGTTCTGGTCTGAACGAAGATTTCCTCGATTGTATCGTGCGTTTAGAGGAGACACAT 211
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCCGGTCTGAACGAAGATTTCCTCGATTGTATCGTGCGTTTAGAGGAGACACAC 60
Query 212 GTTCAACAAGGCTTCGATGAGGGTTACGAAGAAGGTCTTGTGTCCGGTCGTGAAGACGCT 271
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 61 ATTCAACAAGGCTTCGATGAGGGTTACGAAGAAGGTCTCGTGTCGGGTCGTGAAGAAGCT 120
Query 272 CGTCATCTGGGTTTGAAACTCGGGTTCGAGACAGGCGAGCTGATTGGATTCTACAGAGGT 331
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 121 CGTCATCTGGGTTTGAAACTCGGGTTCGAAACAGGCGAGCTTATTGGATTCTACAAAGGT 180
Query 332 TGCTCTGCTCTTTGGAATTCAGCTCTCCGTATTGATCCTACACGCTTCTCTCCTCAGCTC 391
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 181 TGCTCTGCTCTTTGGAATTCAGCTCTCCGTATTGATCCCACTCGCTTCTCTCCTCAGCTC 240
Query 392 CATAAGCATCTCAATGATTTCCATGTCTTGCTCGATAAAATCCCGCTTTTGGATCCCGAG 451
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CATAAGCATCTCAATGATTTCCATGTCTTGCTCGATAAATTCCCGCTTTTGGATCCCGAG 300
Query 452 GACGAAGCTAAAGACGGGATCAAGGATGATCTCAGAGTCAAATTCAGCATCATTTGTGCA 511
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GACGAAGCCAAAGACGGGATTAAGGATGATCTCAGACTCAAATTCAGCATCATTTGTGCA 360
Query 512 TCTCTCGGCTTTTCCAAGAAACAATTTGAGTGGTCGGAGGAGATGTTGAGAGAAATGCTT 571
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCTCTCAGCATTTCCAAGAAACAATTGGAGTGGTCGGAGGAGATGTTGAGAGAAATGCTT 420
Query 572 GGTTGTTGCAAGGTTTACATATCTGAAGCGCGGAATAAGACGGCCCTCGAAGCCATTGAG 631
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 421 GGTTGTTGCAAGGTTTACATATCTGAAGCGCGGAATAAGACCGCCCTCGAAGCTATTGAG 480
Query 632 AGAGCTTTAAAGCCTTTTCCACCAGCTGCAATTGTCAACAAGTTTGAAGATGCGGCTTAT 691
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 AGAGCTGTAAAGGCTTTTCCACCAGCTGCAATCGTCAACAAGTTTGAAGATGCGGCTTAT 540
Query 692 GGCAGGGTTGGTTACACTGTTGTATCCTCGCTTGCTAACGGGTCGTCTTCTTCCTTGAAG 751
|| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 541 GGTAGGGTTGGTTACACTGTTGTATCCTCGCTTGCAAAAGGGTCATCTTCTTCCTTGAAG 600
Query 752 AATGCGGTGTTTGCTATGGTTAAGACTGCTCTCGACACTATCAATCTTGAGTTGCACTGT 811
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 601 AATGCGGTGTTTGCTATGGTTAAGACTGCTCTCGATACTATCAATCTTGAGTTGCATTGT 660
Query 812 GG-ATCTCATCCCCGCCTTGGAGTGGTTGACCACATATGCTTTCACCCCTTATCTCAAAC 870
|| | | ||||| || ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 661 GGTACC-CATCCTCGGCTTGGAGTGGTCGACCACATATGCTTTCACCCTTTGTCTCAAAC 719
Query 871 CTCTATAGAACAAGTTTCTTCCGTCGCCAATTCCCTTGCAATGGATATCGGCTCCATTCT 930
|||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||
Sbjct 720 CTCTATAGAACAAGTTTCTTCCGTGGCCAATTCCGTAGCGATGGATATCGGCTCCATTCT 779
Query 931 TCGAGTTCCTACATATCTCTATGGAGCAGCAGAAAAGGAGCAGTGCACCCTGGATTCGAT 990
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 TCGAGTTCCTACATATCTCTATGGAGCAGCAGAAAAGGAGCAGTGCACGCTGGATTCGAT 839
Query 991 CAGAAGAAAGCTGGGGTACTTCAAGGCAAACAGGGAGGGACATGAATGGGCAGGTGGGTT 1050
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 CAGAAGGAAGCTGGGGTACTTCAAGGCGAACAGGGAGGGACATGAATGGGCAGGTGGGTT 899
Query 1051 TGACCTGGAGATGGTGCCACTGAAGCCAGACGCAGGGCCACAAGAGGTGAGCAAAGCCAA 1110
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGAGCTGGAGATGGTGCCGGTGAAGCCAGACGCAGGGCCACAAGAGGTGAGCAAAGCCAA 959
Query 1111 AGGGGTTGTAGCGGTTGGGGCGTGTGGGTGGGTAAGTAACTATAACGTGCCTGTCATGTC 1170
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 960 AGGGGTTGTAGCGGTTGGGGCGTGTGGGTGGGTGAGTAACTATAATGTGCCTGTCATGTC 1019
Query 1171 AAACGATCTCAAGGCAGTGAGGAGAATAGCGAGGAAGACGAGCGAGAGAGGAGGGGGCTT 1230
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1020 AAACGATCTTAAGGCAGTGAGGAGAATGGCGAGGAAGGCGAGCGAGAGAGGAGGGGGCTT 1079
Query 1231 GGCTTCAGTGCAGACAATGGCGCTGGTGCACGGGGAAGGAGTCATAGAGGTTGCCTGTAA 1290
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 GGCTTCAGTGCAGACAATGGCGCTGGTACACGGGGAAGGAGTCATAGAGGTTGCCTGTAA 1139
Query 1291 CTTGTTGAATCCAAGCCAAGTGGGGGGAGATGAAGTACAGGGACTGATCGAGAGGCTTGG 1350
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1140 CTTGTTGAATCCAAGCCAAGTGGGAGGAGATGAAGTTCAGGGACTGATCGAGAGGCTTGG 1199
Query 1351 CAGAGAGGAAGGTCTGCTTGTGGGAAAAGGGTATTATACGGACTATACACCTGACCAGAT 1410
|||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 1200 CAGAGAGGAAGGTCTGCTTGTGGGAAAAGGGTATTACACGGACCATACACCCGACCAGAT 1259
Query 1411 CGTTGAAAGATATATGGACTTGCTCAACAATTCATAA 1447
|||| ||||||||||||||||||||| |||||||||
Sbjct 1260 CGTTCAAAGATATATGGACTTGCTCAGTAATTCATAA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5