BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20835.1

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480926 jgi|Araly1|480926|fgenesh2_kg.3__3627__AT2G20835.1         508    9e-144


> Ahg480926 jgi|Araly1|480926|fgenesh2_kg.3__3627__AT2G20835.1
Length=364

 Score =  508 bits (275),  Expect = 9e-144
 Identities = 346/377 (92%), Gaps = 18/377 (5%)
 Strand=Plus/Plus

Query  13   AAAAACACAACAACAACATTCAAGAAATGGCCATCTTCTGTTTCCTTGTAGACCAGAGAA  72
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1    AAAAACACAACAACAAGATTCAAGAAATGGCCATCTTCTGTTTCCTTGTAGACCAGAGGA  60

Query  73   AGAAAGTCCGGGGGAGGAAGCCAGCGGCCGGGTTGTGCTCAAGATGCGGAGGAGGAGCAG  132
            || |||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  61   AGCAAGTCCAGGGGAGAAAGCCGGCGGCCGGGTTATGCTCAAGATGCGGAGGAGGAGCAG  120

Query  133  TTGTTGCCGACATGAGAACCTCCACAAGATTCTGTGGGGTCCCTTTTTACCGCAAAGCTT  192
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGGTTGCCGACATGAGAACCTCCACAAGATTCTGTGGGGTCCCTTTTTACCGCAAAGCTT  180

Query  193  GGAAAGCTATCGTCTGTCATATCTGCGGTGCTGTCCTCAAATCATACCACTGAGTCTGAT  252
            |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct  181  GGAAAGCTATCGTCTGTCATTTCTGCGGTGCTGTGCTCAAATCTTACCACTGAGTCTGAT  240

Query  253  GAACCAACAACGTTTTTT-GTTTTAATTCATTCGttt-tttttt--tCCAACAAGCTACT  308
            ||||||||   ||||||| || ||||||||||||||| ||||||  || |||||||||||
Sbjct  241  GAACCAAC---GTTTTTTTGTGTTAATTCATTCGTTTGTTTTTTAATC-AACAAGCTACT  296

Query  309  TGCCATTGTATGTCGCTTGATTGCCTAC-TTTAGACTCTTAAGTCTTAGCTAATGTTTTT  367
            |||||||||||||||||||||||||||| ||| ||| |      || |||||||||||||
Sbjct  297  TGCCATTGTATGTCGCTTGATTGCCTACCTTT-GAC-C------CT-AGCTAATGTTTTT  347

Query  368  GTTTTTCATTTATCTCT  384
            ||| |||||||||||||
Sbjct  348  GTTATTCATTTATCTCT  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15033302066


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5