BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20840.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931973 jgi|Araly1|931973|scaffold_304430.1 1465 0.0
> Ahg931973 jgi|Araly1|931973|scaffold_304430.1
Length=891
Score = 1465 bits (793), Expect = 0.0
Identities = 837/859 (97%), Gaps = 0/859 (0%)
Strand=Plus/Plus
Query 79 CGGTGCAATGTCTCGCTACCAGTCTCATTCCTTTGATGACGGAGAAATTAATCCTTTTGC 138
|||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 14 CGGTGCAATGTCTCGCTACCAGTCTCCTTCCTTTGATGACGGCGAGGTTAATCCTTTTGC 73
Query 139 GAATCCTACAAGTGTCCCAGCTGCAACGTCAAAGCTTTCTCCTCTTCCCCCTGAGCCGTA 198
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GAATCCTACAAGTGTTCCAGCTGCAACGTCAAAGCTTTCTCCTCTTCCCCCTGAGCCGTA 133
Query 199 CGACCGTGGTGCCACAATGGATATTCCTCTTGACTCTGGAAAGGATCTGAAAGCTAAGGA 258
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 134 CGACCGTGGTGCCACAATGGATATTCCTCTAGACTCTGGAAAGGATCTGAAAGCTAAGGA 193
Query 259 GAAGGAACTCCGGGAAAAGGAGGCTGAATTGAAGAGGCGGGAGCAGGAAATCAAGCGGAA 318
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 194 GAAGGAACTCCGGGAAAAAGAGGCTGAACTGAAGAGGCGGGAGCAGGAAATCAAGCGGAA 253
Query 319 AGAAGATGCTATAGCACAGGCCGGAATTGTGATAGAAGAGAAAAACTGGCCACCGTTTTT 378
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 254 AGAAGATGCTATAGCACAGGCTGGAATTGTGATAGAAGAGAAAAATTGGCCACCGTTTTT 313
Query 379 TCCTCTCATCCATCATGACATTTCAAATGAGATACCCATCCATCTGCAGAGAATCCAATA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TCCTCTCATCCATCATGACATTTCAAATGAGATACCCATCCATCTGCAGAGAATCCAATA 373
Query 439 TGTTGCTTTCACATCAATGCTGGGTCTTGTGGTGTGCCTGTTATGGAACATTGTCGCAGT 498
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 374 TGTTGCTTTCACATCAATGCTGGGTCTTGTGGTGTGCCTGTTATGGAACATTGTTGCAGT 433
Query 499 TACTACTGCGTGGATTAAGGGAGAAGGTCCAACAATATGGTTTCTAGCTATTATCTATTT 558
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TACCACAGCGTGGATTAAGGGAGAAGGTCCAACAATATGGTTTCTAGCTATTATCTATTT 493
Query 559 CATATCAGGGGTTCCTGGAGCGTATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAG 618
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 494 CATTTCGGGGGTTCCTGGAGCATATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAG 553
Query 619 GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGTTTCACATAGCGTT 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGTTTCACATAGCGTT 613
Query 679 TTGTGTGTTTGCGGCGGTGGCTCCTCCAATTATCTTCAAGGGAAAATCGCTGACAGGAAT 738
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 614 TTGTGTGTTTGCGGCGGTGGCTCCTCCAATTATCTTCAAGGGAAAATCGTTGACAGGAAT 673
Query 739 ATTGCCGGCGATCGACGTATTGAGTGGGAATATCTTGGTCGGGATATTTTACTTCATTGG 798
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 674 ATTGCCGGCGATCGACGTATTGAGTGGGAATATCTTGGTCGGGATATTCTACTTCATTGG 733
Query 799 GTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGCAAGTGTACAT 858
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 734 GTTTGGGTTCTTCTGTCTGGAGTCACTCGTGAGCATCTGGGTTATTCAGCAAGTGTACAT 793
Query 859 GTACTTCAGGGGGAGCGGGAAAGCAGCAGAGATGAAGCAGGAGGCCACAAGACGAGCAAT 918
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 794 GTACTTCAGAGGGAGCGGGAAAGCTGCAGAGATGAAGCAGGAGGCAACAAGACGAGCAAT 853
Query 919 GATGGCAGCTCTCTGACCA 937
|||||||||||||||||||
Sbjct 854 GATGGCAGCTCTCTGACCA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5