BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20850.1
Length=2847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480928 jgi|Araly1|480928|fgenesh2_kg.3__3629__AT2G20850.1 3179 0.0
> Ahg480928 jgi|Araly1|480928|fgenesh2_kg.3__3629__AT2G20850.1
Length=2737
Score = 3179 bits (1721), Expect = 0.0
Identities = 2065/2223 (93%), Gaps = 56/2223 (3%)
Strand=Plus/Plus
Query 439 TAATTCTCATCAGTGCCAATCTTGGAGGAGAGCTTGGTGTTGGCTTAAACATGTTTACCT 498
|||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 417 TAATTCTCATCAGTTCCAATCTTGGAGGAGAGCTTGGTG-TGGTTTAAACATGTTTACTT 475
Query 499 CTCTTAAAGCAATGGATTTTAGCAACAATCACATTGGAGGAA-GTATCCCATCCACG-T- 555
|||||||||||||||||||||||||||||||||||||||||| || || ||| | | |
Sbjct 476 CTCTTAAAGCAATGGATTTTAGCAACAATCACATTGGAGGAATGT-TCTCAT-TA-GATA 532
Query 556 TGCCT--GTT--TCA--TTG--C-AGA-ACTTGTTTCTTTCAGGTAACAACTTTACAGGA 605
| | || ||| ||| | ||| | |||||||||| |||||||| |||||||||
Sbjct 533 AGGGTAATTTGGTCATTTTGTTCAAGAGA-ATGTTTCTTTCTGGTAACAAGTTTACAGGA 591
Query 606 ACCATCCCAGAATCTCTTTCCTCCTTAAAATCTTTGTCTGTCATGTCCTTGAACAATAAC 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ACCATCCCAGAATCTCTTTCCTCCTTAAAATCTTTGTCTGTCATGTCCTTGAACAATAAC 651
Query 666 CTTTTGTCTGGCAAGATACCCGATGTCTTTCAAGACCTTGGCCTTATGATCAATATAGAT 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 CTTTTGTCTGGCAAGATACCCGATGTCTTTCAAGACCTTGGCCTTATGATCAATCTAGAT 711
Query 726 TTGTCTAGCAACAATCTGAGTGGACCATTACCTCCTTCCATGCAGAATCTTTCGACTCTT 785
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 712 TTGTCTAGCAACAATCTGAGTGGACCATTGCCTCCTTCCATGCAGAATCTTTCGACTCTT 771
Query 786 ACATCCTTGCTTTTGCAGAACAATCATCTTTCAGGAGAGCTTGATGTTCTTCAAGATCTT 845
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 772 ACATCCTTGCTTTTGCAGAACAATCATCTTTCAATAGAGCTTGATGTTCTTCAAGATCTT 831
Query 846 CCCCTCAAGGACTTGAACGTTGAGAACAACCTCTTCAATGGACCTATACCAGAAAAGTTG 905
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 832 CCCCTCAAGGACTTGAATGTCGAGAACAACCTCTTCAATGGATCTATACCAGAAAAGTTG 891
Query 906 TTGAGTATACCAAATTTCATAAAAGGCGGTAATCTGTTTAACGTCACTATTGCTCCATCG 965
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 892 TTGGGTATACCAAATTTCATAAAAGGCGGTAACCTGTTTAACGTCACTATTGCTCCATCG 951
Query 966 CCTTCACCTGAAACACCTCCAAGTCCAACATCACCTAAGCGGCCATTTTTTGGACCACCA 1025
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 952 CCTTCACCTGAAACACCTCCAAGTCCAACATCACCTACGCGGCCGTTTTTTGGACCACCA 1011
Query 1026 TCTCCCAATGCATCAGCTGGTCATGGTCAGGCACACGTGAGATCACCCCCTTCTGATCAT 1085
||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1012 TCTACCAATGCATCAACTGGTCATGGTCAGGCACATGTGAGATCACCCCCTTCTGATCA- 1070
Query 1086 CACCCATCCCGACCAACTCCTCAAGGG-AAAGAAGACTCATTTACCAGTAAAAGAATTAT 1144
| || ||| ||||| |||||||||||| ||| |||| ||||||||||| |||||||| ||
Sbjct 1071 C-CC-ATCTCGACCTACTCCTCAAGGGGAAA-AAGATTCATTTACCAGGAAAAGAATCAT 1127
Query 1145 TTGGATATCCATTCTTGGGGCTTTTTCATTTGTGGTTTTGGCCTTGGTATGTCTACTTTG 1204
||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||
Sbjct 1128 TTGGATATCCATTCTTGGGGCCTTTTCATTTTTGTTTTTGGCCTTGGTATGCCTACTTTG 1187
Query 1205 TGGGAGAAAATGTCTCAGAAAAAGAGAAGACAGTGAACAACTATCCAAACCGCACCTAAC 1264
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TGGGAGGAAATGTCTCAGAAGAAGAGAAGACAGTGAACAACTATCCAAACCGCACCTAAC 1247
Query 1265 TAGTGAATACGGGAGGGCAAGGGAGGGTTCTCGCTCAAATGCTTCTATGCTTCCTCCATC 1324
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1248 TAGTGAATATGGGAGGGCAAGGGAGGGTTCTCGCTCCAATGCTTCTATGCTTCCTCCATC 1307
Query 1325 CAATACATTCAATAAAGACAAGGAGGCTAGACCAAAAGAGAGAGTAGGAGGTGCTTCGAA 1384
| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||
Sbjct 1308 CGATACATTCAATAAAGACAAGGAGGCTAAACCAAAAGAGAGAATAGGGGGTGCTTCGAA 1367
Query 1385 GCTGCATG-GTGGGGCAGAAAGAAGCGTAGGAAGTGAATCAAAGCAGGAGAGTCATGAGA 1443
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1368 GCTGCA-GAGTGGGGCAGAAAGAAGCGTAGGAAGTGAATCGAAGCAGGAGAGTCATGAGA 1426
Query 1444 TAGACATGAATGGCAATGCTATGGATTTGATGCATCCCTCATCAATTCCACCTATCAAAA 1503
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1427 GAGACATGAATGGCAATGCTATGGATTTGATGTATCCCTCATCAATTCCACCTATCAAAA 1486
Query 1504 GGGTCATCGCAAAGGCGACTGAACCTGCTGAAGCATCTCTAAA-AAGGACAACCAGTAAA 1562
||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||
Sbjct 1487 GGGTCATCGCAAAGGCGACTGTACCTGCTGAAGCATCTCTAAAGAAGC-CATCCAGTAAA 1545
Query 1563 TCCCATGGTCCCTTGACAGCTGTGAAGCATTTCACGGTCGCATCTCTACAACAACACACA 1622
||| ||||||||||||| | |||||||| |||||||| ||||||||||||||||||
Sbjct 1546 TCCTTTGGTCCCTTGACATCCGTGAAGCACTTCACGGTTGCATCTCTACAACAACAC--- 1602
Query 1623 AATAGCTTTTCCCACGAAAACCTTATTGGAACAGGCATGCTTGGGAGTGTCTACAGGGCA 1682
| || |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1603 --T--CT---CCCAGGAAAACCTTATTGGAACGGGCATGCTTGGGAGTGTCTACAGGGCA 1655
Query 1683 GAGCTTCCAGGTGGAAAGCTCTTCGCTGTGAGGAAGTTGGATAAGAAGTCTCCCAATCAT 1742
||| |||||| | | || ||||||| ||||||||||||||||||| ||||||||
Sbjct 1656 GAGTTTCCAGCT-------T-TTGGCTGTGATGAAGTTGGATAAGAAGTCTTCCAATCAT 1707
Query 1743 GA-AGAAGAAGGCAAATTTTTGGAGCTAGTGAATAATATAGATAGAATACGGCATGCCAA 1801
| |||| |||| |||||| |||||||||||||||||||||||||||| || || |||||
Sbjct 1708 -ACAGAACAAGGGAAATTTGTGGAGCTAGTGAATAATATAGATAGAATCCGACAAGCCAA 1766
Query 1802 TATTGTCCAACTCGTGGGTTTCTGTTCTGAGCACAGTCAAAGGCTTCTGATCCATGAGTA 1861
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1767 TATTGTCCAACTCGTGGGTTTCTGTTCTGAGCACAGTCAGAGGCTTCTGATCCATGAGTA 1826
Query 1862 TTGTAGGAACGGTACACTGCACGATTTGCTGCATATTGATGACAGGTTGAA-GATTGAAC 1920
||||||||||||||| ||||||||||||||||||| | |||||||||| || |||| |||
Sbjct 1827 TTGTAGGAACGGTACTCTGCACGATTTGCTGCATACTAATGACAGGTT-AATGATTAAAC 1885
Query 1921 TATCATGGAATGTCCGTGTTAGGATTGCACTAGAAGCTGCAAAAGCTCTGGAGTATCTGC 1980
||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1886 TATCATGGAATATCCGTGTTAGGATGGCACTAGAAGCCGCAAAAGCTCTGGAGTATCTGC 1945
Query 1981 ATGAGATCTGTGATCCACCTAGTATCCACCGAAATTTCAAGTCTGCAAATATTCTCCTTG 2040
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1946 ATGAGATCTGTGATCCACCTAGTATTCACCGAAATTTCAAGTCTGCAAATATTCTCCTTG 2005
Query 2041 ATGACGATATAAGGGTGCATGTCTCAGACTGCGGCTTGGCT-CCTCTAATCTCCTCAGGT 2099
|||||||| | |||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 2006 ATGACGATCTGAGGGTGCATGTCTCAGACTGTGGCTTGGCTTCC-CTAATCTCCTCAGGT 2064
Query 2100 GCCGTAAGTCAGTTATCGGGTCAACTCTTAGCGGCCTACGGATATGGAGCTCCAGAGTTT 2159
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 GCCGTTAGTCAGTTATCGGGTCAACTCTTAGCGGCCTACGGATATGGAGCTCCAGAGTTT 2124
Query 2160 GAATATGGGATCTATACAATGAAATGTGATGTCTACAGTTTTGGAGTAGTTATGTTAGAA 2219
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2125 GAATATGGGATCTATACAATGAAATGTGATGTCTACAGTTTTAGAGTGGTTATGTTAGAA 2184
Query 2220 CTCTTGACAGGTCGCAAGTCATATGACAAGAAACGGGATAGAGGAGAGCAATTTCTGGTG 2279
||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2185 CTCTTGACAGGCCGCAAGTCATATGACAAGAAACAGGATAGAGGAGAGCAGTTTCTGGTG 2244
Query 2280 AGATGGGCAATCCCACAGCTTCACGACATTGATGCATTAGCGAAGATGGTCGACCCATCC 2339
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 AGATGGGCAATCCCGCAGCTTCACGACATTGATGCATTAGCGAAGATGGTCGACCCATCT 2304
Query 2340 CTCAAGGGTGACTATCCAGCCAAGTCGCTGTCACACTTTGCTGATGTGATATCACGTTGT 2399
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2305 CTCAAGGGTGATTATCCTGCCAAGTCGCTGTCACATTTTGCTGATGTGATATCACGTTGT 2364
Query 2400 GTTCAGTCGGAACCAGAGTACAGGCCACTAATGTCAGAAGTGGTTCAAGACCTCTCAGAC 2459
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 GTTCAGTCGGAACCAGAGTTCAGGCCACTAATGTCAGAAGTGGTTCAAGACCTCTCAGAC 2424
Query 2460 ATGATCCAGAGAGAACATCGGAGAAATGACTCAAATGGGGATAATCAGTATACGGGAAGA 2519
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2425 ATGATCCAGAGAGAACATCGGAGAAATGACTCAAATGGGGATAATCAGTATGCAGGAAGA 2484
Query 2520 AGATAGTTTAAGGAGATTGTCTCTTATACAAAACAAGTGGTATTATTAGTATTCTTTAGA 2579
|||||||||||||||| ||||||||||||||||| ||| ||||| |||||| ||| ||
Sbjct 2485 AGATAGTTTAAGGAGACTGTCTCTTATACAAAACTAGT---ATTAT-AGTATTGTTTCGA 2540
Query 2580 AAGTCGAAACCATTGTTCTTTAACGA-GCCTTGCTTGTATTATTATATATGTAGAGTGTG 2638
|||||| ||||||||||||||||||| |||||| |||||||||| |||||||||| ||||
Sbjct 2541 AAGTCGCAACCATTGTTCTTTAACGAAGCCTTGTTTGTATTATTGTATATGTAGACTGTG 2600
Query 2639 TGA 2641
|||
Sbjct 2601 TGA 2603
Score = 372 bits (201), Expect = 9e-102
Identities = 246/266 (92%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 218 GAG-AGACAACAACATCTGCTTCCTGGGTTTTC-TCTCCTTTGCCCTTATCTCCCT-TCC 274
||| ||||||||||||||||||||||||||||| | | |||| |||||||| ||| ||
Sbjct 154 GAGAAGACAACAACATCTGCTTCCTGGGTTTTCTTGT-CTTTTTCCTTATCT-CCTATCT 211
Query 275 CTCCTTGTCACTTGCTCTTACCAATCCT---GA-CGATGTTGCGGCTATTAACAGTCTCT 330
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 212 CTCCTTGTCACTTGCTCTTACCAATCCTGACGATCGATGTTGCGGCTATTAACAGCCTCT 271
Query 331 TCCTTGCACTGGAGTCTCCTCTTCTCCCCGGTTGGGTTGCATCTGGAGGTGACCCATGTG 390
|||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 272 TCCTTGCACTGGAGTCTCCTCTTCTCCCTGGTTGGGTTGCATCTAGAGGTGATCCATGTG 331
Query 391 GTGAGAGCTGGCAAGGTGTTCTATGTAATGCTTCCCAAGTAGAAACAATAATTCTCATCA 450
| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 332 GCGAGAGCTGGCAAGGTGTTTTATGTAATGCTTCCCAAGTAGAAACCATAATTCTCATCA 391
Query 451 GTGCCAATCTTGGAGGAGAGCTTGGT 476
||||||||||||||||||||||||||
Sbjct 392 GTGCCAATCTTGGAGGAGAGCTTGGT 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107452581145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5