BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20860.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931978 jgi|Araly1|931978|scaffold_304435.1 1873 0.0
> Ahg931978 jgi|Araly1|931978|scaffold_304435.1
Length=1232
Score = 1873 bits (1014), Expect = 0.0
Identities = 1162/1232 (94%), Gaps = 15/1232 (1%)
Strand=Plus/Plus
Query 38 TTTTTCTCAGGACGTTTGAGATGCATTCGCGCTCCG-CCTTGCTCTATAGATTCCTCCGT 96
||||||||| |||| ||||||||||||||||||||| ||| | ||| |||||||||||
Sbjct 3 TTTTTCTCACGACGATTGAGATGCATTCGCGCTCCGCCCTAG-TCTCCCGATTCCTCCGT 61
Query 97 CCGGCGTCGAGATGCTTCTCCTCTTCCTCGGCTGTAACTCCGGTCACCGTAACGCAATCT 156
|||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct 62 CCGGCGTCGAGATGCTTCTCCTCTTCCTCGCCGGTAACTCCCGTAACCGTAACGCAATCT 121
Query 157 CCCAAGAGTCTCGAGGCTCTTCGAGCTCGGCTGGCGAATGAGTCGCCTTCCCTAACCGAT 216
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 122 CCCAAGAGTCTCGAGGCTCTTCGAGCGCGGCTGGCGAATGAGTCGCCTTCCCTAACTGAT 181
Query 217 TTCATCCACGGCGATACCTATTCGGTGGAAGTTGGAACCAAAAAGAAACCTCTCCCGAAA 276
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 182 TTCATCCACGGCGATACCTATTCCGTGGAGGTTGGAACCAAGAAGAAACCTCTCCCGAAA 241
Query 277 CCTAAATGGATGAAGGAATCAATTCCCGGCGGCGAGAGATATGTCCAGATCAAGAAGAAA 336
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 242 CCTAAATGGATGAAGGAATCTATTCCCGGCGGCGAGAGGTATGTCCAGATCAAGAAGAAA 301
Query 337 TTGAGAGACCTTAAGCTTCACACCGTCTGCGAGGAAGCGAAATGTCCCAATCTCGGTGAG 396
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 302 TTGAGAGACCTTAAGCTTCACACCGTCTGCGAGGAAGCTAAATGTCCCAATCTCGGTGAG 361
Query 397 TGCTGGTCTGGTGGTGAAACTGGAACCGCCACCGCTACGATTATGATCCTTGGGGATACA 456
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 TGCTGGTCTGGTGGCGAAACTGGAACCGCCACCGCTACGATTATGATCCTTGGGGACACG 421
Query 457 TGTACACGCGGCTGCAGGTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGAT 516
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 422 TGTACACGCGGCTGCAGGTTTTGTAATGTGAAGACTTCGCGTACACCTCCACCGCCTGAT 481
Query 517 CCAAATGAACCTAACAATGTGGCTGAAGCAATTGCTTCCTGGGGGGTTGATTATGTTGTG 576
|||||||||||||||||||||||| |||||||||| || |||||||| |||||||| |||
Sbjct 482 CCAAATGAACCTAACAATGTGGCTCAAGCAATTGCATCTTGGGGGGTAGATTATGTGGTG 541
Query 577 ATCACCAGTGTAGATCGAGATGATTTACCTGATCAAGGGAGTGGTCATTTTGCTGAAACT 636
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 542 ATCACCAGTGTAGATCGAGATGATTTACCTGATCAAGGGAGTGGCCATTTTGCTGAAACA 601
Query 637 GTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGTTCCTGATTTC 696
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GTACAGAGATTGAAAGTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGTTCCTGATTTC 661
Query 697 CGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGGGCTTGATGT-CTTAGCTCA 755
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 662 CGTGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGGGCTTGATGTCCTT-GCTCA 720
Query 756 CAACATTGAGACAGTTGAAGAGCTTCAGAGTTTTGTGCGGGACCATCGTGCTAACTTTAA 815
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 CAACATTGAGACTGTTGAAGAGCTTCAGAGTTTTGTGCGGGATCATCGTGCTAACTTTAA 780
Query 816 GCAGTCATTGGATGTGCTTAGGATGGCTAAGGAGTATGCACCTGCAGGCACCTTAACAAA 875
||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 781 GCAGTCACTGGATGTGCTTAGGATGGCTAAGGAGCATGCTCCTGCTGGCACCTTAACAAA 840
Query 876 GACTTCTGTAATGCTGGGATGTGGAGAGACCCCTGATCAAGTGGTTAAGACAATGGAGAA 935
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 841 GACCTCTGTAATGCTGGGATGTGGTGAGACTCCTGATCAAGTGGTTAAGACAATGGAGAA 900
Query 936 GGTGAGAGCAGCAGGGGTTGACGTTATGACATTTGGCCAATATATGCGACCATCTAAACG 995
|| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 901 AGTCAGAGCAGCAGGGGTTGACGTTATGACTTTTGGTCAATATATGCGACCGTCTAAACG 960
Query 996 CCACATGCCAGTAGCTGAGTACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGG 1055
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 961 GCACATGCCAGTAGCTGAGTACGTGACACCAGATGCCTTTGAGAGGTATCGGCTTCTTGG 1020
Query 1056 CATGGAAATGGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGC 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CATGGAAATGGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGC 1080
Query 1116 GGGAGAGTACTACATAAAGTCGATGATAGAAGCCGATCGAGTGGCTTCTCCTTCTACATC 1175
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||
Sbjct 1081 GGGAGAGTACTACATAAAGTCGATGATAGACGCTGATCGAGTTGCTTCTCCTTCTACCTC 1140
Query 1176 CCCGTAGAT--T-A--CAC-ACTA---TA--ATATGTGAATTCTTTCACTTTATTGCTTT 1224
||||||||| | | || | || || |||||||||||||||||||||||||||||
Sbjct 1141 CCCGTAGATACTCATTCAAGATTACGCTATGATATGTGAATTCTTTCACTTTATTGCTTT 1200
Query 1225 GTTTCTTCTGCGGGTAAGCCATTCACAACACT 1256
||||||||||||||||||||||||||||||||
Sbjct 1201 GTTTCTTCTGCGGGTAAGCCATTCACAACACT 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5