BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20870.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931979 jgi|Araly1|931979|scaffold_304436.1 706 0.0
> Ahg931979 jgi|Araly1|931979|scaffold_304436.1
Length=463
Score = 706 bits (382), Expect = 0.0
Identities = 428/450 (95%), Gaps = 3/450 (1%)
Strand=Plus/Plus
Query 46 AAATTAATGGCTTCTTCACTTATCACCTCCGCAGTCATTGTCGTGGTTTTAAGCCTAGTG 105
||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||
Sbjct 16 AAA-TAATGGCTTCTTCACTTATCACATCCGCAGTCATTGTCGTGCTTTTAAGCCTACTG 74
Query 106 CTTGGATCTGTAGAGCAAGTGAGTGGACTACGTCACGTTCCCAAGTCCCCTAAGACCACT 165
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 75 CTTGGATCTGCAGAGCAAGTGAGAGGACTACGTCACGTTCCCAAGTCCCCTAAGACCACT 134
Query 166 GATGTCAAACACCCTGACTTTCTTGTAACCATTGAGCCCAAACCAACTATTCTCATTCCC 225
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 135 GATGTCAAACACCCTGACTTTCTTGTAACCATTGGGCCCAAACCAACTATTCTTAT-CCC 193
Query 226 -GGTGTTGGAAGGTTCTTGCTTCCTCCCAAATGCAAGAAGCCGTTCTACCCTTACAATCC 284
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 194 TGGTGTTGGAAGGTTCTTGCTTCCTCCCAAATGTAAGAAGCCGTTCTACCCTTACAATCC 253
Query 285 TGTCACCGGAGCTCCACTTACTGGTGGGGGAATCCCATCATATAATGGTGGACAAGGGGC 344
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 254 TGTCACCGGAGCTCCTCTTACTGGTGGGGGAATCCCATCATATAATGGTGGCCAAGGGGC 313
Query 345 CGGACCTCACACCCAACTCCCTGGTGGCGATGATACGCTTGTCCCAAACCCCGGATTTGA 404
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 314 GGGACCTCGTACCCAACTCCCTGGTGGCGATGATACGCTTGTCCCAAACCCTGGTTTTGA 373
Query 405 AGCGCCAACCCCGACCATTGGAGCTGGCACCGGAAGCAACGGCCAAGTTCCACCAGTGCC 464
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 374 AGCTCCAACCCCGACCATTGGAGCTGGCGCAGGAAGCAACGGCCAAGTTCCACCAGTGCC 433
Query 465 ACTACCCTGAGTATTATTAATCTGTCAACA 494
||||||||||||||||||||| ||||||||
Sbjct 434 ACTACCCTGAGTATTATTAATTTGTCAACA 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5