BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G20875.1

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931980 jgi|Araly1|931980|scaffold_304437.1                        516    6e-146


> Ahg931980 jgi|Araly1|931980|scaffold_304437.1
Length=359

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 335/361 (93%), Gaps = 7/361 (2%)
 Strand=Plus/Plus

Query  14   ACCACTTGCGATAATATATCATGAAGtctcttcttctccttgcctttttcctctctttct  73
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACCACTTACGATAATATATCATGAAGTCTCTTCTTCTCCTTGCCTTTTTCCTCTCTTTCT  60

Query  74   tctttggctctctcttGGCTAGGCATTTACCAACATCCTCCCATCCAAGTCATCATCATG  133
            |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   TCTTCGGCTCTCTCTTGGCAAGGCATTTACCAACACCCTCCCATCCAAGTCATCATCATG  120

Query  134  TAGGAATGACCGGGGCATT---GAAGCGTCAGAGGAGGAGGCCGGACACGGTGCAGGTGG  190
            | |||||||||||| ||||   ||||||||||||||||||||||||||||||||| ||||
Sbjct  121  TGGGAATGACCGGGACATTAATGAAGCGTCAGAGGAGGAGGCCGGACACGGTGCAAGTGG  180

Query  191  CTGGGTCTAGGTTGCCAGATTGCTCACACGCGTGTGGCTCGTGTTCTCCATGCCGTCTTG  250
            ||||||||||||||||||| |||||||||||||||||||| || || |||||| | ||||
Sbjct  181  CTGGGTCTAGGTTGCCAGACTGCTCACACGCGTGTGGCTCATGCTCCCCATGCAGACTTG  240

Query  251  TGATGGTTAGCTTTGTGTGTGCATC-CGTCGAAGAGGCTGAGACTTGTCCAATGGCTTAT  309
            ||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| 
Sbjct  241  TGATGGTTAGCTTTGTGTGTGCATCGC-TCCAAGAGGCTGAGACTTGTCCAATGGCTTAC  299

Query  310  AAATGCATGTGCAACAATAAGTCCTACCCTGTCCCTTGATCAGCCTCTTC-TACACTTAT  368
            || |||||||||||||| ||||||||||| ||||| |||||||||| ||| |||||||||
Sbjct  300  AAGTGCATGTGCAACAACAAGTCCTACCCCGTCCCATGATCAGCCT-TTCCTACACTTAT  358

Query  369  T  369
            |
Sbjct  359  T  359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16368747681


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5