BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20880.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931981 jgi|Araly1|931981|scaffold_304438.1 1219 0.0
> Ahg931981 jgi|Araly1|931981|scaffold_304438.1
Length=1025
Score = 1219 bits (660), Expect = 0.0
Identities = 920/1036 (89%), Gaps = 55/1036 (5%)
Strand=Plus/Plus
Query 78 TCTATGGCTACTGCTAAGAACAAGGGAAAATCAATCAGG-GTCCTTGGTACCAGTGAAGC 136
||||||||||| |||||||||||||||||||| |||||| | ||||||||| | |||| |
Sbjct 18 TCTATGGCTACAGCTAAGAACAAGGGAAAATCCATCAGGAG-CCTTGGTACAAATGAATC 76
Query 137 AGAGAAAAAGGATGAGATGGAGTTGGAGGAGGAGTTCCAGTTTAGTAGCGGCAAGTATAA 196
|| | || | | | |||||||||||||||||||||||||||||||||||||
Sbjct 77 --AG----A-GA--A-A---A--TGGAGGAGGAGTTCCAGTTTAGTAGCGGCAAGTATAA 121
Query 197 AGATTCGGGTCCTGGCTCGGACATGTGGTTAGGAGATGCTTCCTCTACGTCTCC-AAGAA 255
|||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 122 AGATTCGGGTTCTGGCTCGGACATGTGGTTAGGAGAAGCTTCCTCTACGTC-CCAAAGAA 180
Query 256 GTCTTAGGAAGACTAGAACCTTTGACCGACATAATCCCTATCTCGTATCTTCTTATGCTA 315
|||||||||||||||| |||||||||||||||||||| |||||| |||| | ||
Sbjct 181 GTCTTAGGAAGACTAGGACCTTTGACCGACATAATCCTTATCTC----CTTC--A-GC-- 231
Query 316 CTCCTCAGCCGCCAACAACA---ACT-AC-ATGC-TC---TGTCTCTTTTCCCTTTTACC 366
| | || || |||| ||| || | | | || |||| |||||||||||| ||
Sbjct 232 C-GC-CA-CCAACAACTACATGCTCTGTCTCTTCTTCGAGTGTCGCTTTTCCCTTTTCCC 288
Query 367 TCCCTCCAGCGATTCAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAA 426
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TCGCTCCAGCGATTCAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAA 348
Query 427 GACAGCAACAAATGATCTCGTTTGATCCTcaacaacaggtgcaaccatatgttgcacaac 486
|||||||||||||||||||||||| |||||||| ||||||||| |||||| ||
Sbjct 349 GACAGCAACAAATGATCTCGTTTGGTCCTCAACTACAGGTGCAGCCATAT-TT------- 400
Query 487 agcagcaacaacaacaacaTCTATTGCAGTACTGGAGAGACAT-TCTGAAGCTGAGTCCG 545
|| | |||||||| |||||| | |||||||||||||||||||| | ||||| |||| |||
Sbjct 401 AGTA-CAACAACAGCAACATATGTTGCAGTACTGGAGAGACATAT-TGAAGTTGAGCCCG 458
Query 546 AGCGGAAGAATGATGATGATGAACATGTTAAGACAAGAAAGCGATCTGCCACTGACGAGG 605
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 459 AGCGGAAGAATGATGATGATGAACATGTTAAGACAAGAAAGTGATCTGCCACTGACGAGG 518
Query 606 CCACCGGTTCAACCCTTCAGCGCCACCAAGCTATATAGAGGTGTCAGGCAACGCCACTGG 665
|| || ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 519 CCGCCCATTCAACCATTCAGTGCCACCAAGCTATATAGAGGGGTCAGACAACGCCACTGG 578
Query 666 GGAAAATGGGTTGCCGAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACA 725
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GGAAAATGGGTTGCTGAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACA 638
Query 726 TTCGATACAGCAGAAGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGAGGGGA 785
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TTCGATACAGCAGAGGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGAGGGGT 698
Query 786 GAGACCGCTAGGCTCAA-TTTCCCTGAACTTTTTCTCAATAAACAAGAGCCAACTCCCGT 844
|||||||| |||||||| |||||| || ||||||||||||||||||||| ||||||| ||
Sbjct 699 GAGACCGCCAGGCTCAATTTTCCC-GAGCTTTTTCTCAATAAACAAGAGTCAACTCCGGT 757
Query 845 GCATCAGAAACAATGTGAGACGGGGACTACTAGTGAAGACTCAAGCAGAAGAGGAGAGGA 904
||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| |||| ||
Sbjct 758 GCATCAGAAACAATGCGAGACGGCGACTACTAGTGAAGAGGCAAGCGGAAGAAGAGAAGA 817
Query 905 TGATTCGAGCACGGCATTGGCAGTAGGAGGGGTGAGTGAGGAGACGGGTTGGGCTGAGGC 964
|||||| ||| || |||||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct 818 TGATTCAAGCGCGACATTGGCAGTGGGAAGGGTGAGTGAGGAGACAGGTTGGGCTGAGGC 877
Query 965 ATGGTTCAATGCAATTCCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 ATGGTTCAATGCAATTCCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCA 937
Query 1025 CTTTCCCATTTCTAACCATAAGGACGATCTTGA-CGCCACACAAAACTCTTCTTCTGATA 1083
|||||||||||||||||| |||||||||| ||| | || |||||||||||||||||||||
Sbjct 938 CTTTCCCATTTCTAACCACAAGGACGATCATGATCCCC-CACAAAACTCTTCTTCTGATA 996
Query 1084 CAATTTAGGACCTTTG 1099
|||||||| |||||||
Sbjct 997 CAATTTAGAACCTTTG 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5