BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20890.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931982 jgi|Araly1|931982|scaffold_304439.1 1452 0.0
> Ahg931982 jgi|Araly1|931982|scaffold_304439.1
Length=947
Score = 1452 bits (786), Expect = 0.0
Identities = 896/950 (94%), Gaps = 4/950 (0%)
Strand=Plus/Plus
Query 95 CTCTTTCTCACTTCAATTTAGCGATGGCTGCAACTGCAATCTCTTCTCTTTCCTTCCCAG 154
||||||||| ||||| ||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 1 CTCTTTCTCTCTTCAGTTTCGCAATGGCTGCAACTGCAATCTCTTCCCTTTCCTTACCAG 60
Query 155 CTTTGGGTCAATCGGACAAGATCTCCAATTTCGCATCTTCTCGTCCTCTCGCCTCCGCAA 214
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 CGTTGGGTCAATCGGACAAGATCTCCAATTTCGCACCTTCTCGTCCTCTCGCCTCCACAA 120
Query 215 TTCGCATCTGCACAAAGTTTTCTCGCCTTTCTTTGAATTCGCGTTCCACTTCGAAATCTC 274
||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||
Sbjct 121 TTCGCATCTGCACCAAGTCTTCTCGCCACTCTTTGACTTCGCGTTCCACTTCGAGATCTC 180
Query 275 TTATTCACTGCATGTCCAATGTTACCGCCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 334
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTATTCACTGCATGTCCACTGTTA---CCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 237
Query 335 AATTCCTAAAAGCTTACAAGCGACCCATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 394
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 ATTTCCTAAAAGCTTACAAGCGACCTATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 297
Query 395 TCATTGTCCAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTATGATCCTGTTTTTG 454
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 TCATTGTACAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTACGATCCTGTTTTTG 357
Query 455 CCCTTGGATTTGTCACTGTATATGATCAGCTCATGGAAGGATATCCGAGTGATCAAGACC 514
| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 358 CACTTGGCTTTGTCACTGTGTATGATCAGCTCATGGAAGGATATCCGAGCGATCAAGATC 417
Query 515 GAGATGCCATTTTTAAGGCTTACATTGAAGCCTTGAATGAGGATCCTAAGCAATACCGAA 574
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 418 GAGATGCCATTTTTAAAGCTTACATAGAAGCCTTGAATGAGGATCCTAAACAATACCGAA 477
Query 575 TTGATGCTCAGAAGATGGAGGAATGGGCACGAAGTCAGACTTCTGCTTCACTAGTTGACT 634
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 TTGATGCTCAGAAGATGGAGGAATGGGCAAGAAGTCAGACTTCTGCTTCACTAGTTGACT 537
Query 635 TTTCCTCTAAAGAAGGAGATATTGAAGCAGTTCTTAAGGACATTGCAGGAAGAGCTGGTA 694
||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 538 TTTCCTCTAGAGAAGGAGAAATTGAAGCACTTCTTAAGGACATTGCAGGAAGAGCTGGGA 597
Query 695 GTAAGGAGGGGTTTAGTTACAGCAGGTTCTTCGCTGTTGGGCTCTTTCGTTTGCTTGAGC 754
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 598 GTAAGGAGGGATTTAGTTACAGTAGGTTCTTCGCCGTTGGGCTCTTTCGTTTACTTGAGC 657
Query 755 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 717
Query 815 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTTTCAAAGCTTGTCCAAG 874
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTGTCAAAGCTTGTCCAAG 777
Query 875 CCAAGGAATTGCTTAAGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGAGAAAGAGCCC 934
||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 778 CCAAGGAATTGCTTAGGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGGGAGAGAGCCG 837
Query 935 AATCTCAGAAGGCTAACGAAACAATCTCCAAGTGTCTGGGAGATACTCTATATAACCCAT 994
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 AATCCCAGAAGGCTAATGAAACAATCTCCAAGTGTCTTGGAGATACTCTATATAACCCAT 897
Query 995 CTTTCTTGGTTGAACGGAAATCTTAGAAAATCATTTGTGACTTCtttttt 1044
|||||||||||||| |||||| || ||||||| ||||||||| ||||||
Sbjct 898 CTTTCTTGGTTGAATGGAAATAGTAAAAAATCAATTGTGACTT-TTTTTT 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5