BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20900.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480938 jgi|Araly1|480938|fgenesh2_kg.3__3639__AT2G20900.3 2416 0.0
Ahg328880 jgi|Araly1|328880|fgenesh1_pm.C_scaffold_7001107 1051 0.0
> Ahg480938 jgi|Araly1|480938|fgenesh2_kg.3__3639__AT2G20900.3
Length=1738
Score = 2416 bits (1308), Expect = 0.0
Identities = 1508/1599 (94%), Gaps = 36/1599 (2%)
Strand=Plus/Plus
Query 49 TAATTTTGGATCAAACAATGCAAACGCAGCACATGACCGAGTCCGCGTCAGAAAAAGGGG 108
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||
Sbjct 25 TAATTTTGGATCAAACAATGCAAATGCAGCGCATGACTGAGTCCGCGTCAGAAAATGGGG 84
Query 109 CCAACTGCTCCGTAGCCGCCAAGAATCTCGCAGATCCCGATTCCTCTTGATCATCGTCTT 168
|||||||||||||||||||||||||||||| | | || ||| | ||| || | |
Sbjct 85 CCAACTGCTCCGTAGCCGCCAAGAATCTCG-A-A----GA-TCC-C--GAT--TC--C-T 129
Query 169 CTTCTACCAAAATTGTTGCGCGA-CAATGGAGAAATACAACAGTTTATCAGATTTTCTCA 227
|||| | ||| | | | ||||||| |||||||| ||| |||||||||||||||
Sbjct 130 -TTCT--C----TTGAT---C-ATCAATGGATAAATACAATAGTGTATCAGATTTTCTCA 178
Query 228 AGGAGTTCTACATCCCTACGTACGTCCTCTCGGCGGAAACAGAAgaggaggaggaggagg 287
|||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||
Sbjct 179 AGGAGTTCTACATCCCTACGTACGTCCTGTCGCCGG----AG--GAGGAGGAGGAGGAGG 232
Query 288 agagTCGTCCTACACCTGCGAGCCCCGTCCTTGTCTTCATCAACTCCAAAAGCGGTGGTC 347
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 -CTGT--TCCTCCACCTGCGAGCCCCGTCCTTGTCTTCATCAACTCCAAAAGCGGTGGTC 289
Query 348 AGTTGGGTGGCGAACTCATTCTCACCTACCGATCTCTTCTCAATCACAATCAGGTCTTTG 407
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 290 AGTTGGGTGGCGAACTCATTCTCACCTACCGATCTCTTCTCAATCACAGTCAGGTCTTTG 349
Query 408 ATCTCGACCAGGAGACTCCAGATAAAGTGCTCCGCAGAATCTATCTTAACCTGGAGAGGC 467
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 350 ATCTCGACCAAGAGACTCCCGATAAAGTGCTCCGCAGAATCTATCTTAACCTCGAGAGGC 409
Query 468 TCAAAGATGATGATTTCGCTCGTCAGATTCGGGAGAAATTAAAAATCATTGTTGCAGGAG 527
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TCAAAGATGACGATTTCGCTCGTCAGATTCGGGAGAAATTAAAAATCATTGTTGCAGGAG 469
Query 528 GTGATGGCACTGCTGGGTGGCTCCTTGGAGTTGTATGTGACCTTAAATTGTCACATCCTC 587
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 470 GTGATGGCACTGCTGGGTGGCTCCTTGGAGTTGTATGTGACCTTAAATTATCACATCCTC 529
Query 588 CTCCAATTGCCACTGTACCTTTGGGTACAGGAAACAACCTTCCCTTTGCTTTTGGATGGG 647
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 530 CTCCAATTGCCACTGTACCTTTGGGTACTGGAAATAACCTTCCCTTTGCTTTTGGATGGG 589
Query 648 GAAAGAAGAATCCAGGAACAGATAGGACTGCAGTGGAGTCGTTTTTGGAACAAGTGTTGA 707
||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 590 GAAAGAAAAATCCAGGAACAGATAGAACTGCAGTGGAGTTGTTTTTGGATCAAGTGTTGA 649
Query 708 AGGCAAAAGTGATGAAGATTGACAATTGGCACATACTTATGAGGATGAAAACTCCCAAAG 767
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 AGGCAAAAGAGATGAAGATTGACAATTGGCACATACTTATGAGGATGAAAACTCCTAAAG 709
Query 768 AAGGTGGTTCTTGTGATCCTGTTGCTCCTCTTGAGTTACCACATTCTCTACATGCATTTC 827
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 710 AAGGTGGTTCTTGTGATCCTGTTGCTCCTCTTGAATTACCACATTCTCTACATGCATTTC 769
Query 828 ACCGTGTTTCTCCAACTGATGAACTAAACAAGGAAGGCTGCCACACTTTTCGAGGAGGGT 887
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 770 ACCGTGTTTCTCCAACAGATGAACTAAACAAGGAAGGCTGCCACACATTTCGAGGGGGGT 829
Query 888 TCTGGAATTACTTTAGCCTCGGAATGGATGCTCAGATTTCTTATGCGTTTCATTCTGAGA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TCTGGAATTACTTTAGCCTCGGAATGGATGCTCAGATTTCTTATGCGTTTCATTCTGAGA 889
Query 948 GGAAGCTTCACCCTGAAAAGTTTAAGAATCAGCTGGTTAATCAGAGTACGTATGTAAAGC 1007
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGAAGCTTCACCCTGAAAAATTTAAGAATCAGCTGGTTAATCAGAGTACGTATGTAAAGC 949
Query 1008 TTGGTTGCACGCAAGGATGGTTTTGTGCCTCTCTTTTCCACCCTGCTTCACGGAATATAG 1067
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTGGCTGCACGCAAGGATGGTTTTGTGCCTCTCTTTTCCACCCTGCTTCACGGAATATAG 1009
Query 1068 CTCAGCTTGCCAAGGTTAAGATTGCAACTAGAAATGGCCAGTGGCAGGACCTCCACATAC 1127
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1010 CTCAGCTTGCCAAGGTTAAGATTGCAACTAGAAATGGCCAGTGGCACGACCTCCACATAC 1069
Query 1128 CACATAGCATCAGGTCCATTGTATGTCTGAATCTGCCCAGCTTTTCGGGAGGATTAAATC 1187
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1070 CTCATAGCATCAGGTCCATTGTATGTCTGAATCTGCCCAGCTTTTCTGGAGGTTTAAATC 1129
Query 1188 CTTGGGGCACACCAAATCCCAGGAAACAACGTGATAGAGGCTTGACTCCACCATTTGTAG 1247
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1130 CTTGGGGCACACCAAATCCCAGGAAACAACGCGATAGAGGCTTGACTCCCCCGTTTGTAG 1189
Query 1248 ATGATGGCCTCATTGAGGTTGTTGGGTTTAGAAATGCTTGGCATGGTCTTGTTCTGCTCG 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 ATGATGGCCTCATTGAGGTTGTTGGGTTTAGAAATGCTTGGCATGGTCTTGTTCTGCTCG 1249
Query 1308 CTCCCAATGGACATGGGACACGACTTGCCCAGGCAAATCGTATTCGCTTCGAATTTCACA 1367
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1250 CTCCAAATGGACATGGGACACGACTTGCCCAGGCAAATCGCATTCGCTTCGAATTTCACA 1309
Query 1368 AAGGTGCAACCGACCATACATTCATGAGGATGGATGGGGAGCCCTGGAAACAGCCACTGC 1427
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AAGGTGCAACTGACCATACATTCATGAGGATGGATGGGGAGCCCTGGAAACAGCCACTGC 1369
Query 1428 CACTGGATGATGAAACTGTGATGGTAGAGATTTCACACCTTGGCCAAGTGAACATGCTTG 1487
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1370 CACTGGATGATGAAACTGTGATGGTAGAGATTTCACATCTTGGCCAAGTGAACATGCTTG 1429
Query 1488 CAACTCATGACTGCCGGTCCAGAAGTGTGTTTGACCCTTCAACACCCCGCCATCAGGATG 1547
||||||||||||||||||||||||| |||||||||| |||||||| |||||| | ||||
Sbjct 1430 CAACTCATGACTGCCGGTCCAGAAGCATGTTTGACCCATCAACACCACGCCATTATGATG 1489
Query 1548 GTGCAGAAGATTATGATGATAATGAAGACGACTCAGTGGCTGAAGGCGAAGAATTTAGAA 1607
||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 1490 CTGCAGAAGAGTATGATGATAATGAAGACGAATCAATGGCTGAAGGCGAGGAATTTAGAA 1549
Query 1608 AGTTTGGTGCTGCGGATACCTTCAAGATTCCTGATGAGG 1646
|||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AGTTTGGTGCTGCGGATACCTTCAAGATTCCTGATGAGG 1588
> Ahg328880 jgi|Araly1|328880|fgenesh1_pm.C_scaffold_7001107
Length=1386
Score = 1051 bits (569), Expect = 0.0
Identities = 1098/1349 (81%), Gaps = 54/1349 (4%)
Strand=Plus/Plus
Query 194 ATGGAGAAATACAACAGTTTATCAGATTTTCTCAAGGAGTTCTACATCCCTACGTACGTC 253
||||| |||||||| | |||||||||||| || ||| | |||||||| ||| |||||||
Sbjct 22 ATGGAAAAATACAAGAATTTATCAGATTTCCTTAAGAAATTCTACATTCCTTCGTACGTT 81
Query 254 CTCTCGGCGGAAACAGAAg-aggagg-aggaggaggag-agTCGTCCTA-CACCTGCGAG 309
|||||| | ||| | | || | || | | | || ||| || | | |||||| |||
Sbjct 82 CTCTCGCCTGAAGCCG-AGCCTGTGGCA-CA-AACCAGTAGTAGTAC-ACCACCTGAGAG 137
Query 310 CCCCGTCCTTGTCTTCATCAACTCCAAAAGCGGTGGTCAGTTGGGTGGC-GAACTCATTC 368
||| |||| || |||||||||||||||||||| ||||| | ||| || |||||||| |
Sbjct 138 CCCAATCCTCGTATTCATCAACTCCAAAAGCGGAGGTCAACTAGGT-GCAGAACTCATAC 196
Query 369 TCACCTACCG-ATCTCTTCTCAATC-ACAATCAGGTCTTTGATCTCGACCAGGAGACTCC 426
| |||||||| | |||| ||||| | |||| ||||| |||||||| || | ||||||||
Sbjct 197 TTACCTACCGCA-CTCTACTCAA-CGACAAGCAGGTTTTTGATCTTGAGGAAGAGACTCC 254
Query 427 AGATAAAGTGCT-CCGCAGAATCTATCTTAACCTGGAGAGGCTCAAAGATGATGATTTCG 485
|||||| ||||| | | |||||||||||||| || |||||||| ||||| |||| |||||
Sbjct 255 AGATAAGGTGCTGCAG-AGAATCTATCTTAATCTAGAGAGGCTAAAAGACGATGGTTTCG 313
Query 486 CTCGTC-AGATTCGGGAGAAATTAAAAATCATTGTTGCAGGAGGTGATGGCACTGCTGGG 544
| | | |||||||||| || || ||||| || |||||||| || ||||| || |||||
Sbjct 314 CAAG-CAAGATTCGGGACAAGTTGAAAATAATGGTTGCAGGGGGAGATGGAACAGCTGGT 372
Query 545 TGGCTCCTTGGAGTTGTATGTGACCTTAAATTGT-CACATCCTCCTCCAATTGCCACTGT 603
||||||||||||||||| | ||| |||||||| | || |||| ||||||||||| || ||
Sbjct 373 TGGCTCCTTGGAGTTGTTTCTGATCTTAAATTATCCA-ATCCACCTCCAATTGCTACGGT 431
Query 604 ACCTTTGGGTACAGGAAACAACCTTCCCTTTGCTTTTGGATGGGGAAAGAAGAATCCAGG 663
||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||| ||
Sbjct 432 TCCTTTGGGTACCGGAAACAACCTTCCATTTGCATTTGGATGGGGTAAGAAAAATCCTGG 491
Query 664 AACAGATAGGACTGCAGTGGAGTCGTTTTTGGA-ACAAGTGTTGAAGGCAAAAGTGATGA 722
|||||||||| || | ||||| || |||||||| | ||||| | || ||||||| |||||
Sbjct 492 AACAGATAGGTCTTCTGTGGATTCTTTTTTGGATA-AAGTGATCAACGCAAAAGAGATGA 550
Query 723 AGATTGACAATTGGCACATACTTATGAGGATGAAAACTCCCAAAG-AAGGTGGTTCTTGT 781
|||| ||||||||||| |||||||||||||||||| || || ||| || | ||||||
Sbjct 551 AGATAGACAATTGGCAGATACTTATGAGGATGAAAGCT-CCTAAGCAA---GACTCTTGT 606
Query 782 GATCCT-GTTGCTCCTCTTGAGTTACCACATTCTCTACATGCATTTCACCGTG-TTTCTC 839
||| || | ||| |||||| || ||||||||||||| | || | |||| ||| ||
Sbjct 607 GATACTAG-TGCACCTCTTAAGCTACCACATTCTCT---T-CA--T---CGTGCTTT-TC 655
Query 840 CAACTGATGAACTAAACAAGGAAGGCTGCCACACTTTTCGAGGAGGG-TTCTGGAATTAC 898
|| | ||| || ||| | ||||| | ||| || ||||| || ||| ||||||||||||
Sbjct 656 CATCAGATCAAGAAAATATGGAAGATTACCAAACATTTCGTGG-GGGATTCTGGAATTAC 714
Query 899 TTTAGCCTCGGAATGGATGCTC-AGATTTCTTATGCGTTTCATTCTGAGAGGAAGCTT-C 956
|||||| | ||||||||||||| || | |||||||| |||||||| ||| ||| || |
Sbjct 715 TTTAGCTTGGGAATGGATGCTCAAG-TATCTTATGCATTTCATTCCCAGA-GAAAATTGC 772
Query 957 ACCCTGAAAAGTTTAAGAATCAGCTGGTTAATCAGAGTACGTATGTAAAGCTTGGTTGCA 1016
|||| ||||||||||| |||||||| ||||||||||| || ||| |||||||| ||||||
Sbjct 773 ACCCAGAAAAGTTTAAAAATCAGCTAGTTAATCAGAGCACATATCTAAAGCTTAGTTGCA 832
Query 1017 CGCAAGGATGGTTTTGTGCCTCTCTTTTCCACCCTGCTTCACGGAATATAGCTCAGCTTG 1076
| ||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||
Sbjct 833 CACAAGGATGGTTTTTTGCCTCTCTTTTTCACCCTGCTTCACAAAACATAGCTCAGCTTG 892
Query 1077 CCAAGGTTAAGA-TTGCAACTAGAAA-TGGCCAGTGGCAGGACCTCCACATACCACATAG 1134
| |||||| ||| ||| || || ||| |||||| ||| | ||||| ||||| || || ||
Sbjct 893 CAAAGGTTCAGATTTGTAA-TA-AAAGTGGCCAATGGAATGACCTTCACATTCCCCAAAG 950
Query 1135 CATCAGGTCCATTGTATGTCTGAATCTGCCCAGCTTTTCGGGAGGATTAAATCCTTGGGG 1194
||| |||||||| || ||| ||||||| || |||||||| |||||| || ||||||||||
Sbjct 951 CATAAGGTCCATAGTCTGTTTGAATCTTCCTAGCTTTTCTGGAGGACTAGATCCTTGGGG 1010
Query 1195 CACACCAAATCCCAGGAAACAACGTGATAGAGGCTTGACTCCACCATTTGTAGATGATGG 1254
||||||||||| | |||||||||||||||| || | ||| ||||||| || || |||||
Sbjct 1011 AACACCAAATCCTAAGAAACAACGTGATAGAAGCCTAACTGCACCATTCGTTGACGATGG 1070
Query 1255 CCTCATTGAGGTTGTTGGGTTTAGAAATGCTTGGCATGGTCTTGTTCTGCTCGCTCCCAA 1314
||||| || | ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1071 ACTCATCGAAATCGTTGGGTTTAGAAATGCTTGGCATGGTCTTGTTCTGCTCACTCCAAA 1130
Query 1315 TGGACATGGGACACGACTTGCCCAGGCAAATCGTATTCGCTTCGAATTTCAC-AAAGGTG 1373
||||||||||||| ||||||| |||||||| || ||||| ||||| || || |||||||
Sbjct 1131 TGGACATGGGACAAGACTTGCACAGGCAAACCGAATTCGATTCGAGTT-CAAGAAAGGTG 1189
Query 1374 CAACCGAC-CATACATTCATGAGGATGGATGGGGAGCCCTGGAAACAGCCACTGCCACTG 1432
| | || ||| ||| |||||| |||||||| ||||| |||||||| ||||| ||| |
Sbjct 1190 CGGC-GAAGCATGCATACATGAGAATGGATGGAGAGCCATGGAAACAACCACTTCCATTA 1248
Query 1433 GATGATGAAACTGTGATGGTAGAGATTTCACACCTTGGCCAAGTGAACATGCTTGCAACT 1492
|||||||||||||||||||||||||| ||||| | ||| |||| ||||||||||||||
Sbjct 1249 GATGATGAAACTGTGATGGTAGAGATCTCACATCATGGACAAGCCAACATGCTTGCAACC 1308
Query 1493 CATGACTGCCGGTCCAGAAGTGTGTTTGA 1521
|| | ||| | |||| ||| |||||||
Sbjct 1309 CACAATTGCAGCTCCAAAAGCATGTTTGA 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5