BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20920.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480941 jgi|Araly1|480941|fgenesh2_kg.4__1__AT2G20920.1 1568 0.0
> Ahg480941 jgi|Araly1|480941|fgenesh2_kg.4__1__AT2G20920.1
Length=975
Score = 1568 bits (849), Expect = 0.0
Identities = 934/976 (96%), Gaps = 2/976 (0%)
Strand=Plus/Plus
Query 23 AACACCAACAGAAGACAGAAATGGCAACCGCAGCTCTCTCCGCCGCCCGACCCAACCGCC 82
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAACAACAGAAGAAAGAAATGGCAACCGCAGCTCTCTCCGCCGCCCGACCCAACCGCC 60
Query 83 TTAGCTCAGCCTCCTCCGATGTTCCTCTCCACCCCCTATATCTCCCTACCAAGCTCCAAT 142
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 61 TTAGTTCAGCCTCCTCCGATGTTCCTCTCCACCCGCTTTATCTCCCTACCAAGCTCCAAT 120
Query 143 TTCCTTCCCGTAAGACTCAGCTGTGGCGCTCCGCCGCGATTCTCTTACCCACACGGCGGC 202
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCTTCCCGGAAGACTCAGCTGTGGCGCTCCGCCGCGATTCTCTTACCCACACGGCGGC 180
Query 203 GATGCGCTCCGCCTAGAGCTAGTTCTCGCGCCGACGATTCTCCACCCTTCGATATGTCTG 262
|||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 181 GATGCGCTGCGCCTAGAGCTAGTTCTCGCGCCGACGATTCTCCGCCGTTCGATATGTCTG 240
Query 263 TGGAGACGGCGCTTAAGGTTCTCGGAGTCTCCGAAGGAGCTTCCTTCGACGAAATTCTTC 322
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 241 TGGAGACTGCGCTTAAGGTTCTCGGTGTCTCTGAAGGAGCTTCCTTCGACGAAATTCTTC 300
Query 323 GTGCCAAGAAATCGATCCTGGCTTCTCGTAAGGACGACCCCAACGCCATCTCTCAGGCTG 382
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGCCAAGAAATCGATCCTTGCTTCTCGTAAGGACGACCCCAACGCCATCTCTCAGGCTG 360
Query 383 AGGCTGCATATGACATGCTGCTGATGCAGAGCCTAAACCAACGCCGAGCAGGAAAAGTTG 442
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 361 AGGCTGCATATGACATGCTACTGATGCAGAGCCTTAACCAACGCCGAGCAGGAAAAGTTG 420
Query 443 TAAGCAACAACATTCGCTACGCTGATGTTAAATCTAGTAACCCTCTGGGAACAAGTACTG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAAGCAACAACATTCGCTACGCTGATGTTAAATCTAGTAACCCTCTGGGAACAAGTACTG 480
Query 503 TGACTCAGTGGATGAAGAATCCACCTGTCTCTGTTGATATGCCTTCCACGAGCGATCTCG 562
|| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 481 TGTCTCGGTGGCTGAAGAATCCACCTGTCTCTGTTGATATGCCATCCACGAGCGATCT-G 539
Query 563 GGA-TACAAGCTGGAGTCTATGGAGCCATGATGGTTTTGACTTATGTGAATGGGAGTTCC 621
||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 540 GGAATACAAGCTGGAGTCTATGGAGCCATGATGGTTTTTACTTACGTGAACGGGAGTTCC 599
Query 622 TTTGAATCTTCTGGGATGCCTTATGCTGGTGCTGATGTGCCCGGACTTATATTGGCTAGC 681
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 TTAGAGTCTTCTGGGATGCCTTACGCTGGTGCTGATGTGCCCGGACTTATATTGGCTAGC 659
Query 682 AGCTTTGGGGCTTCCCTATACTTTATGACCAAAAAGAAAGTCAAGCTAGGGAAAGCAGCT 741
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 AGCTTTGGAGCTTCCCTATACTTTATGACCAAAAAGAATGTCAAGCTAGGGAAAGCAGCT 719
Query 742 GCGTTGACGGCAGGAGGATTAGTGGCAGGTGCAGTGGTGGGATCAGCCATTGAGACCTGG 801
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 GCGTTAACAGCAGGAGGATTAGTGGCAGGTGCAGTGGTGGGATCGGCCATTGAGACCTGG 779
Query 802 CTGCACGTTGATGTGGTTCCGTTTCTGGGTCTCCACTCCCCAGCTGCAGTCGTGAGTGAA 861
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 CTGCATGTTGATGTGGTCCCGTTTCTGGGTCTCCACTCCCCAGCTGCAGTCGTTAGTGAA 839
Query 862 TTCATAGTATTCTCTCAGTTCTTGGTGTCTCTATGCTTAAGGTAGAACTTTGTACATTGG 921
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 TTCATAGTCTTCTCTCAGTTCTTGGTGTCTCTATGCTTACGGTAGAACTTTGTACATTGG 899
Query 922 CTTATGCAAATTTGGCTCAACCTGTCACGCTGGTATATGTACTTCGTTTATATGCATTTT 981
||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 900 CTTCTGCAAAATTGGCTCAACCTGTCACGCTGGTATATGTACTCCGTTTATATGCATTTT 959
Query 982 GTACAGAACACTCAAA 997
|||||||||| |||||
Sbjct 960 GTACAGAACAATCAAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5