BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20940.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932020 jgi|Araly1|932020|scaffold_400008.1 691 0.0
> Ahg932020 jgi|Araly1|932020|scaffold_400008.1
Length=431
Score = 691 bits (374), Expect = 0.0
Identities = 403/417 (97%), Gaps = 1/417 (0%)
Strand=Plus/Plus
Query 34 AAATCACCGATTTCGATGGCGACTCGGCTCAAGGAGATTGTGAAGAAGTACGGAAAAGTC 93
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAATCTCCGATTTCGATGGCGACTCGGCTCAAGGAGATTGTGAAGAAGTACGGAAAAGTC 66
Query 94 GCGCTTGGAGTCCATTTCTCGGTCTCCGGCGTCTCAATTAGTGGATTCTACATCGCGATC 153
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 67 GCGCTTGGAGTCCATTTCTCGGTCTCCGGCGTCTCAATTAGTGGATTTTACATCGCGATC 126
Query 154 AAGAACAACGTCGATGTCGAATCGCTCTTGGAGAAATACCAAATCCCATGGTTCTCCAGC 213
||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 127 AAGAACAACGTGGATGTCGAATCGCTCTTGGAGAAGTACCAAATCCCTTGGTTCTCCAAC 186
Query 214 AAGGAAAACCCTAACCCTAGCCTCGATTTAAAGCTGGAAGAGCAAGGTTCCGTTACGAGC 273
||||||||||||||||||||||||||||| ||| |||||||| ||||||| | |||||||
Sbjct 187 AAGGAAAACCCTAACCCTAGCCTCGATTTGAAGATGGAAGAGGAAGGTTCGGGTACGAGC 246
Query 274 GATAACAAGACGAAACAGCTTGCGAAATCGGCCGGCGGAGCCCTAGCGTTGGCGGTTTTG 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GATAACAAGACGAAACAGCTTGCGAAATCGGCCGGCGGAGCCCTAGCGTTGGCGGTTTTG 306
Query 334 TGCAATAAGGCGCTTTTTCCGATCAGAGTTCCGATCACGATGGCGTTGACTCCTCCAATC 393
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TGCAATAAGGCGCTGTTTCCGATCAGAGTTCCGATCACGATGGCGTTGACTCCTCCAATC 366
Query 394 GCTAGATTCCTCAGGCAGAGGAAGATCCTCAAAACCGGCCAATGACTATTT-CTCTC 449
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 367 GCTAGATTCCTCAGGCAGAGGAAGATCCTCAAAACCGGCCAATGACTCTTTTCTCTC 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5