BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20950.4
Length=2260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480944 jgi|Araly1|480944|fgenesh2_kg.4__4__AT2G20950.1 1122 0.0
> Ahg480944 jgi|Araly1|480944|fgenesh2_kg.4__4__AT2G20950.1
Length=1671
Score = 1122 bits (607), Expect = 0.0
Identities = 695/738 (94%), Gaps = 3/738 (0%)
Strand=Plus/Plus
Query 944 GCA-GCCGGTTCACTACAAGTATCAGATCACATCGGTAGAGACTTACGAGCAGGAGAGGC 1002
||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 917 GCACGCCGGTTCACTACAAGTATCAGATCACATCGGTGGAGACTTACGAGCAAGACAGGC 976
Query 1003 AATTCGAGCCGCCGGAGCTGCCGGACGAGTCACAGAGCTTCACGATGCAGGAGATCGCCA 1062
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 977 AATTCGAGCCGCCGGAGCTGCCGGACGAGTCTGAGAGCTTCACGATGCACGAGATCGCCA 1036
Query 1063 GAATGCGCGGACTTCAAAGCTACGGA-AAGGAAGAGATACAATTAGCGATATCCGAGACT 1121
|||||||||||||||||||||| || |||||||||||||| || |||||||||||||||
Sbjct 1037 AAATGCGCGGACTTCAAAGCTAC-GACAAGGAAGAGATACAGTTGGCGATATCCGAGACT 1095
Query 1122 TACGTCTCCGTCGCCAATTACAAGGTACGGATGAGCATCGCCGCCACGCTCGAAGCGATC 1181
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 1096 TACGTCTCCGTCGCCAATTACAAGGTGCGGATGAGCGTCGCCGCCACGCTCGAGGCGATC 1155
Query 1182 ATTGACAAACACGGTGACATCGCCGCCTCGTCGAAGTTACAATCTACCTCAACGAGGTCG 1241
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1156 ATTGACAAACACGGTGACATCGCCGCCTCGTCGAAGTTGCAATCTACCTCAACGAGATCG 1215
Query 1242 TTTTATCTCGAATCCCTAGCCGCAGCAGTAATGGAACTGAAATCAACGGCGTTGAGAGAT 1301
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1216 TTTTATCTCGAATCCCTAGCCGCAGCAGTGATGGAACTGAAATCGACGGCGTTGAGAGAT 1275
Query 1302 CTGACGAAGACGCGAGTGGCGGAAATCGCGGCGGTCGTGAAGGACATGGATTCGGTGAAA 1361
|||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1276 CTGACGAAGACGCGGGTGGCGGAGATCGCAGCGGTCGTGAAAGACATGGATTCGGTGAAA 1335
Query 1362 ATCGATGTATCGTGGCTCAAAACAGCGGTGACGGAGCTAGCGGAGGCGGTGGAGTACTAC 1421
||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1336 ATCGACGTATCATGGCTCAAAACAGCCGTCACGGAGCTAGCGGAGGCGGTGGAGTACTAC 1395
Query 1422 GGGAAGTACGACACGGCGAAGATTGTGAGGGAGGAGTGCGATAGGGAAATGACGGCGGGG 1481
|||||||||||||||||||| || ||||| ||||||||||| ||||||||||||| ||||
Sbjct 1396 GGGAAGTACGACACGGCGAAAATCGTGAGAGAGGAGTGCGAAAGGGAAATGACGGAGGGG 1455
Query 1482 AAAAAagagatggaggagatgagggaggagctgcggcggagagagaaggaaacgaaggaa 1541
||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1456 AAAGAAGAGATGGAGGAGCTAAGGGAGGAGCTGCGGCGGAGAGAGAAGGAAACGAAGGAA 1515
Query 1542 tgtagagagagagTGACGGAGTTGGCGGGACGGCTGGGGCAGCTGGAGATGAAGGATGTG 1601
|||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |||
Sbjct 1516 AGTAGAGAGAGAGTGACGGCGATGGCGGGACGACTGGGGCAGCTGGAGATGAAGGAAGTG 1575
Query 1602 AGAGTGAAGAAGAATCTGGAGCTCTATGAGAGCAAGGTCCTTAAATTCGACGGTCATTCG 1661
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1576 AGAGTGAAGAAGAATCTGGAGCTCTTTGAGAGCAAGGTCCTTAAATTCGACGGTCATTCT 1635
Query 1662 GTTCTCGTTGACTGAACC 1679
||||| ||||||||||||
Sbjct 1636 GTTCTTGTTGACTGAACC 1653
Score = 793 bits (429), Expect = 0.0
Identities = 487/514 (95%), Gaps = 7/514 (1%)
Strand=Plus/Plus
Query 1 GATCTTCTCAGACGGCAGTTCATAACAAAACTCCTAA-TTAAGAATTTGGTAGTTGGATC 59
||||| ||||||||||||||||||||||||||||||| |||| |||||| || ||||||
Sbjct 5 GATCTCCTCAGACGGCAGTTCATAACAAAACTCCTAATTTAA-AATTTGTTAATTGGATT 63
Query 60 CCAGGTTTGCATACCGATCCGGGGATGGATTTCTTCCATTCAAGAGAGAAGAGACATGGC 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 64 CCAGGTTTGCATACCGATCCCGGGATGGATTTCTTCCATTCAAGAGAGAAGAGACATGGC 123
Query 120 AAAAGAGCAGGATTGTTTGGTCACAAAAGTGCGAGCAAGAGCAACCCGTCGAGCCCTCCT 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 124 AAAAGAGCAGGATTGTTTGGTCACAAAAGTGCGAGCAAGAGCAACCCGTCCAGCCCTCCT 183
Query 180 CATCTTGCTGAGGGTCGGTCTCAGCCGACAACTCATTTCGGCATGAAAAGATCGGAATCA 239
||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct 184 CATCTTGCTGAGGCTCGGTCTCTGCCGACAACTCATTTCGGTATGAAAAGATCAGAATCA 243
Query 240 GAGTACGCGTTTCCCATCTCCGATGAACAAACCACTCACTGGAAACCACAACAGCAAGCC 299
||| |||||||||||||||||||||||||||||||||||||||||| | | |||| ||||
Sbjct 244 GAGCACGCGTTTCCCATCTCCGATGAACAAACCACTCACTGGAAAC-A-A-CAGCGAGCC 300
Query 300 TCTGAACGCAT-CCCAAATTCCCACCAACGGCCTCCAGTCTACAGATATAGCACGCCTGA 358
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TCTGAACGCATTCCCAA-TTCCCACCAACGGCCTCCAGTCTACAGATATAGCACGCCCGA 359
Query 359 GCGTCCTAGAGAGCCTGATGAGGATGTGACTCCAAGGAGCAACGGTTCTGGGAGCCCTTT 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GCGTCCTAGAGAGCCTGATGAGGATGTGACCCCAAGGAGCAACGGTTCTGGGAGCCCTTT 419
Query 419 TCGATCTGCCAGAACCCGCACGCCTGATCGTCGTAAAAGGTCTAGCGAGATAACCAAAGA 478
|||||||||||||||||||||||||||||| |||| |||||||||||| ||| ||||||
Sbjct 420 TCGATCTGCCAGAACCCGCACGCCTGATCGCCGTAGGAGGTCTAGCGAGTTAAGCAAAGA 479
Query 479 GCTGTACGAGAGAATGTATGAGGCAGATGCCAAT 512
||||||||||||||||||||||||||| ||||||
Sbjct 480 GCTGTACGAGAGAATGTATGAGGCAGAGGCCAAT 513
Score = 523 bits (283), Expect = 2e-147
Identities = 335/359 (93%), Gaps = 7/359 (2%)
Strand=Plus/Plus
Query 513 CATGAACGTGGAAGAGACTACAGTAGAGAAAGATATGAAGCTGAA-GGCAATGTAACTTC 571
||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 565 CATGACCGTGGAAGAGACTACAGTAGAGAAAGATATGAAGCT-AAGGGCAATGTAACTTC 623
Query 572 CCGGAACA--G-ACCTTCAAGCCCATTTCATCCATCCCAAAGCCGCTCTCCACCGCCACA 628
||||||| | || |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 624 GCGGAACAGCGCTCCGTCAAGCCCATTTCATCCATCCCGAAGCCGCTCTCCACCGCAACA 683
Query 629 CGCAAGGACTCAGAGATACAACAACGGAAAAGATCATTTCGAGGGGATGTACGAGGCAGA 688
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 GGCAAGGCCTCAGAGATACAACAACGGAAAAGATCATTTCGAGGGGATGTACGAGGCAGA 743
Query 689 TGCCGATATCACACCGCGTAACAGCCCTCCCATGAGTCCTGTTCATCAACAC-ACAAGCT 747
||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||
Sbjct 744 TGCCGATATCACACCGCGTAACAGCCCTCCCATGAGTCCTGTTAATCA-CACCACGAGCT 802
Query 748 ACTCTCCACCACCGCCGTTCTACTCATCCAGTGACGACGAAGACGACAACAATTCCACCT 807
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 803 ACTCTCCACCACCGCCATTCTACTCATCCAGCGACGACGAAGACGACAACAATTCCACCT 862
Query 808 ATCTCTTTCCAGAAATTGCCACTGGACGTCGTTCCAGGGGAGTTTCAGGAAGCAGCACG 866
| ||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct 863 ACCTCTTTCCAGAAATTGCAACAGGACGTCGTTCCAGGGGAGTCTCAGGGAGCAGCACG 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85093607330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5