BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20960.1
Length=2533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480948 jgi|Araly1|480948|fgenesh2_kg.4__8__AT2G20960.1 3840 0.0
> Ahg480948 jgi|Araly1|480948|fgenesh2_kg.4__8__AT2G20960.1
Length=2421
Score = 3840 bits (2079), Expect = 0.0
Identities = 2320/2434 (95%), Gaps = 26/2434 (1%)
Strand=Plus/Plus
Query 63 TTCTTCTTCCTCAATTATAATTTT-TTCACAGGTTTGAGATCTTATCATAGAGTTTTGTT 121
||||||||||||||| || ||||| ||| ||| ||||||||||||| |||||| |||| |
Sbjct 1 TTCTTCTTCCTCAATAAT-ATTTTATTCTCAGATTTGAGATCTTATTATAGAG-TTTGGT 58
Query 122 TTAAGTTTGTGAGATGGAATTAGTGTCTGGAAAAGTAGTTCCAGGTTGCTCCAACGCAGG 181
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTAAGTTTGTGAGATGGACTTAGTGTCTGGAAAAGTAGTTCCAGGTTGCTCCAACGCAGG 118
Query 182 CAATCCTTTCCATGAGTGTACTGCTATCTGTTTTGAGAGAGTAAACTCTCCAGATGTCCA 241
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 119 CAATCCTTTCCATGAGTGTACTGCTATCTGTTTTGAGAGATTAAACTCTCCAGATGTCCA 178
Query 242 CAAGAAGGAGAAGAAACTCTTTGGGTTTGGTAAGAGAACTCCCAGCAGGGATCAGACTCC 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 CAAGAAGGAGAAGAAACTCTTTGGGTTTGGTAAGAGAACTCCAAGCAGGGATCAGACTCC 238
Query 302 TCCA-GCTAGTCCGGCTCGTGGAAGCAGATCACCTCTGGCCAGCTATTTCGCCAAGAAGA 360
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCCAGGC-AGTCCAGCTCGTGGAAGCAGATCACCTCTGGCCAGCTATTTCGCCAAGAAGA 297
Query 361 AGGTTGAGTCGTCAGCAGAGAGTTCACCATCCTCTTATGATCACACCAATGGCAACTTCT 420
||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 AGGTTGA--C-TCATCAGAGAGTTCACCATCCTCCAATGATCACACCAATGGCAACTTCT 354
Query 421 TAAGTCGCCTTTCCCCGCTACAGGGACGCAAGATCGAGCCTTCAAGCAATGTCGATTCGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TAAGTCGCCTTTCCCCGCTACAGGGACGCAAGATCGAGCCTTCAAGCAATGTCGATTCGC 414
Query 481 TGCCAGTTTCGCCTTCTCTCGCTCTATACTCAGGGGGAGACTACTTTGCAAGGAGGGCTG 540
| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 415 TACCAGGCTCGCCTTCTCTCGCTCTATATTCAGGGGGAGACTACTTTGCAAGGAGGACTG 474
Query 541 ATCAGCGTGGAGATGAGGATGATGATGTATCACCAAGGCCTTTTGGAACTCAGCCTAAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 475 ATCAGCGTGGAGATGAGGATGATGATGTATCACCAAGGCCTTTTGGAACTCAGCCAAAGA 534
Query 601 CCCCTGAACACCCTCTTAGGACGCCTCAGCATAGGCCACGCACACCGCAACACCGCTCTG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 535 CCCCTGAACACCCTCTTAGGACGCCTCAGCATAGGCCACGCACACCGCAACATCGCTCTG 594
Query 661 CACACCAAGAGGACGC-T-TTTTCACTAGAAACTAGGCCGAGGACTCCTGAACGCCGATC 718
|||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 595 CACACCAAGAGGAC-CATGTTTT-ACTAGAAACTAGGCCGAGGACTCCTGAACGCCGATC 652
Query 719 CAATACCTCTGATACTAGGCCAAGGACACCCATACATGAGTCTGCGGCAACAGGAAGAAG 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 653 CAATACCTCTGATACTAGGCCAAGGACACCCATACATGAGTATGCGGCAACAGGAAGAAG 712
Query 779 GCCTCAAACACCAGAAACTAGACCAAGGACTCCTGATCACCGATATGCCACCTATGATAA 838
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 713 ACCTCAAACACCAGAAACTAGACCGAGGACTCCTGATCACCGATATGCCACCTCTGATAC 772
Query 839 TAGGCCGAGGACACCCATACATGAGTCTGCTGCAACAGAAAGGAGGCCCCAAACACCAGA 898
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 773 TAGGCCGAGGACACCCATACATGAGTCTGCTGCAAGAGGAAGGAGGCCCCAAACACCAGA 832
Query 899 AACTAGGCCGAGGACTCCTGAACACCGATCTGCCATCC-CTGACACTAGGCCGAGGACAC 957
||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||
Sbjct 833 AACTAGGCCGAGGACTCCTGAACACCGATATGCCA-CCTCTGACACTAGACCGAGGACAC 891
Query 958 CTATACATGAGTCTGCTGCAACAGGAAGGAGGCCTCAAACACCAGAAACTAGGCCGAGGA 1017
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CCATACATGAGTCTGCTGCAACAGGAAGGAGGCCTCAAACACCAGAAACTAGGCCGAGGA 951
Query 1018 CTGCACAACGTAGAGGGAGGTCACCTGAGTTCATGGAAAGATCCCCCGGACCAAGGTCCA 1077
||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 952 CTGCACAACATAGAGGGAGGTCACCTGAGTTCATGGAAAGATCCCCCGGGCCATGGTCCA 1011
Query 1078 AGACCCCAGAGCCTCAACCTACTTACTTCGAACCATCCTCAAGGACTCCAAAACA-GCGG 1136
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||| | ||||
Sbjct 1012 AGACCCCAGAGCCTCAACCTACCTACTTTGAACCATCTTCAAGGACTCCAAAA-ATGCGG 1070
Query 1137 TCCAAGACGCCTGAACCCAGCCCTAGGATTCCCCAAACTCAGCCCATGTCCCACAGATCC 1196
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1071 TCCAAGACGCCAGAACCCAGCCCTAGGATTCCCCAAACTCAGCCCATATCCCATAGATCC 1130
Query 1197 CTTGACAACGCTGCTCTT-AAAATGCCTCGGACAGTTGAAACTAGGCCTAGGACGCCAGA 1255
||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||| ||
Sbjct 1131 CTTGACAACGCCGCTCTTCAAAA-GCCTCGAACAGTTGAAACTAGGCCTAGGACGCCGGA 1189
Query 1256 ACACCAGCCGAGGACTGTGGAAACAAAGCCAAGAATACATGAAAGTAGGCCCAAA-ACTG 1314
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1190 ACACCAGCCGAGGACTGTGGAAACAAAGCCAAGAATACATGAAAGTAGG-CCAAAGACTG 1248
Query 1315 CAGTCTATGGAGGAAGGTCACCTGATCACAGGGAAAAAATCTCAC-AA--GAAATGGGTC 1371
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1249 CAGTCTATGGAGGAAGGTCACCTGATCACAGGGAAAAAATCTCACAAACTCAAATGGGTC 1308
Query 1372 AAAGATCATCTCATGCCTACAATTATCTTGGGAGCAAAGCTGAGTCAGTGTACATTGAGA 1431
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1309 AAAGATCATCTCATGCCTACAATTATCTTGGGAGCAAAGCTGAATCAGTGTACATTGAGA 1368
Query 1432 AGAACGAGGAATCAGTTCTACTCTTTCCAGAACTGATTTTGTCACCTCAAGAAAGGCCAC 1491
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 AGGACGATGAATCAGTTCTACTCTTTCCAGAACTGATTTTGTCACCTCAAGAAAGGCCAC 1428
Query 1492 CCTCTAGACTTATTACGCTTAATCACCGAGGATATGAAACACCTAACAAACAGAAAGAAC 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1429 CCTCTAGACTTATTACGCTTAATCACCGAGGATATGAAACACCTAACAAACAGGAAGAAC 1488
Query 1552 ATTGTGATGAAATGGATGATTCTGCAAGCACAGACGACGATAAATTTTCATTTGTGGATG 1611
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1489 ATTGTGATGAAATGGATGATTCTGAAAGCACAGACGACGATAAATTTTCATTTGTGGATG 1548
Query 1612 ATCACGACGAACACACTGTTTCAATTTACGCTGAAACCACATCGAAATCTGGAAGCAGCG 1671
|||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1549 ATCATGAAGAACACACTGTTTCGTTTTACCCTGAAACCACATCGAAATCTGGAAGCAGCG 1608
Query 1672 AACAAGAGGAACAGCATAAAGCAAACAACGAGCCACCGGAGCTGCCAGATGAATCACAGA 1731
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 AACAAGAGGAACAACATAAAGCAAACAACGAGCCACCGGAGCTGCCAGATGAATCACAGG 1668
Query 1732 GCTTCAGTCTCGCT-GAGATCTCTCGTATGAAAGGAATAATTACCAATAATGAAATAAGG 1790
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1669 GCTTCAGTCTCG-TAGAGATCTCTCGTATGAAAGGAATAATTACCAAGAATGAAACAAGG 1727
Query 1791 GACGTGATGCAGTCTATTCTATCTGAGTCTTACGTTTCTGTGGGACAGTACAAGGTCAGA 1850
|||| ||||||||| |||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1728 GACGAGATGCAGTCCATTCTATCTGAGTCTTACGTTTCTGTGGGAGACTACAAGGTGAGA 1787
Query 1851 GCTAGCGTCTCGACCACTCTACAACACATACTCCAGAAGCACGGTGACATTGCGTCTGGT 1910
|||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1788 GCTAGCGTCTCGGCCACTCTACAACACATACTCCAGAAGCACGGCGACATCGCGTCCGGT 1847
Query 1911 TCCAAACTACAATCGCTTGCTACACGATCCTACTACCTCGACATGCTTGCCTCGGTGGTA 1970
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1848 TCCAAACTACAATCACTTGCCACACGATCCTACTACCTCGACATGCTTGCCTCGGTGGTA 1907
Query 1971 TTCGAACTCCAAACAACTCCCCTGAAGTATCTCAAGGAGAGCCGCGTGGTGGAAATGGTA 2030
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1908 TTCGAACTCCAGACAACTCCCCTGAAGTATCTCAAGGAAAGCCGCGTGGTGGAAATGGTA 1967
Query 2031 GCGATTGTTAAAGACATTGAGTCCGTGAAAATCAAAGCAGGTTGGCTCAAGCCTGTCCTG 2090
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1968 GCGATTGTTAGAGACGTTGAGTCTGTGAAAATCAAAGCAGGTTGGCTCAAGCCTGTCCTG 2027
Query 2091 GAGGAGATCGTAGAGGCGGTAAAACACTACGATGAACACAAGATGAGCGTAGTGGAGAAA 2150
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2028 GAGGAGATCGTAGAGGCGGTAAAACACTACGATGAACACAAGATGAGCATAATGGAGAAA 2087
Query 2151 GAGGTGTGGGAGAGAGATGTGTTACTTGCGAAACAAGAAACTGAGAAACAGGTGAAAGAA 2210
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2088 GAGGTGTGGGAGAGAGATGTGTTACTTGCGAGACAAGAAACGGAGAAACAGGTGAAAGAA 2147
Query 2211 CTGGGAGAGAAGGAGAAGAAGATAAAGGAGTGGAGAGCTAAAATGACGGAGATGGCTGCG 2270
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 2148 CTGGGAGAGAAAGAGAAGAAGATGAAGGAGTGGAGAGCTAGAATGACGGAGATGGCTGCG 2207
Query 2271 AAGTTAGGGGATCTTGATATGAAAAGAGCTCGTCTCCACAAAAGCTTCACATTTCTGAGC 2330
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 AAGTTAGGGGGTCTTGATATGAAAAGAGCTCGTCTCCACAAAAGCTTCACATTTCTGAGC 2267
Query 2331 TCCAAGGTCGACAAGTTTCAAGGGAAACCCCTTCTTCAAGGCATCTTGTAACCAACCAA- 2389
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 2268 TCCAAGGTCGACAAGTTTCAGGGGAAACCCCTTCTTCAAGGCATCTTGTGACCAACCAAA 2327
Query 2390 TTAGTCTGAATATTCTTTTGTTCATCTTGTTACCCGCAAAATAAGCGTTTGTGAACGGTT 2449
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 TTAGTCCGAATATTCTTTTGTTCATCTTGTTACCCGCAAAATAAGCGTTTGTGAACGGTT 2387
Query 2450 TGCTTTGGAAAAGTTTTATGTATTATCAAATTTT 2483
|| ||||||||| ||| || |||||||||| |||
Sbjct 2388 TGTTTTGGAAAACTTTGATATATTATCAAAATTT 2421
Score = 303 bits (164), Expect = 3e-81
Identities = 210/233 (90%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 682 CACTAGAAACTAGGCCGAGGACTCCTGAACGCCGATCCAATACCTCTGATACTAGGCCAA 741
||| ||||||||| |||||||||||||| | ||||| ||||||||||||||||| |
Sbjct 721 CACCAGAAACTAGACCGAGGACTCCTGATCACCGATATGCCACCTCTGATACTAGGCCGA 780
Query 742 GGACACCCATACATGAGTCTGCGGCAACAGGAAGAAGGCCTCAAACACCAGAAACTAGAC 801
|||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||| |
Sbjct 781 GGACACCCATACATGAGTCTGCTGCAAGAGGAAGGAGGCCCCAAACACCAGAAACTAGGC 840
Query 802 CAAGGACTCCTGATCACCGATATGCCACCTATGATAATAGGCCGAGGACACCCATACATG 861
| ||||||||||| |||||||||||||||| ||| | ||| |||||||||||||||||||
Sbjct 841 CGAGGACTCCTGAACACCGATATGCCACCTCTGACACTAGACCGAGGACACCCATACATG 900
Query 862 AGTCTGCTGCAACAGAAAGGAGGCCCCAAACACCAGAAACTAGGCCGAGGACT 914
||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 901 AGTCTGCTGCAACAGGAAGGAGGCCTCAAACACCAGAAACTAGGCCGAGGACT 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95492244215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5