BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20970.2
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343665 jgi|Araly1|343665|fgenesh1_pg.C_scaffold_4000007 1391 0.0
> Ahg343665 jgi|Araly1|343665|fgenesh1_pg.C_scaffold_4000007
Length=1059
Score = 1391 bits (753), Expect = 0.0
Identities = 959/1058 (91%), Gaps = 16/1058 (2%)
Strand=Plus/Plus
Query 1 ATGAATAAGGTTGAAGAAGAAGaaaaaaaGAGGAGACTAGAAGCAAATGGATTGTTTTGG 60
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 7 ATGAATAAGGTTGAAGAAGAAGAAAAAGAGAGGAGACTACAAGCAAATGGATTGTTTTGG 66
Query 61 ACAGAACGTTTGTTTCTGTTTCTACTTGTCATCTTCCCAACATACCTCTTAGATCTTATC 120
||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 67 ACAGAGCGTTTGTTTCTGTTTCTACTTGTCATCTTCCCCACATACCTCGTGGATCTTATC 126
Query 121 ATCCCTATCATTCTCGCCACTACTCTTTTCGCATTACCATTCTTCTTCTTTTGCACTAGT 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 127 ATCCCTATCATTCTCTCCACTACTCTTTTCGCATTACCATTCTTCTTCTTTTGCCCTAAT 186
Query 181 CTCTCTTCAGTTGGACCATCAGGTATTGGAAAAATCTGGCTGTTTATATTGGACCGCTCT 240
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 187 CTCTCTTCAGTTGGACCATCTGGTATTGGAAGAATCTGGCTGTTTATATTGGACCGCTCT 246
Query 241 ACGTTTTACTTAGCCTATGAGTATTATAAACTATTGGATCGAGGCTTTGAGCTTACCTTC 300
|||||||||||||||| |||||||||||||||||||| ||||||||||||| || |||
Sbjct 247 ACGTTTTACTTAGCCTTTGAGTATTATAAACTATTGGCGGGAGGCTTTGAGCTCACATTC 306
Query 301 CTCTGGCGTCTCACCGTTTTCCTCTCCGT-TGTGATCCACTC-GATTTACAT-GTTCGAG 357
|| |||||||||||||||||||||||| | | |||||||||| | ||||||| | ||||
Sbjct 307 CTTTGGCGTCTCACCGTTTTCCTCTCCATCT-TGATCCACTCCG-TTTACATCGC-CGAG 363
Query 358 CATTTCCTTAGATCTCATCAAGTCGTACCACCTCCTCC---TCC---ACCTCAATCTAAG 411
|||| ||||||||||||||||| ||||||||||||||| ||| |||||| ||||||
Sbjct 364 CATTACCTTAGATCTCATCAAGCCGTACCACCTCCTCCACCTCCTCCACCTCAGTCTAAG 423
Query 412 AGTGATGAGACTCCCGGTGAAGTGCGCGAGCAAGTGGAGAAGATGAAGGAGTTAGTGGAA 471
| |||||||||||||||||| ||| || || ||||||| |||||||||||||||||||||
Sbjct 424 AATGATGAGACTCCCGGTGATGTGTGCAAGGAAGTGGAAAAGATGAAGGAGTTAGTGGAA 483
Query 472 GATGGGAAGAAGAGGGTGACAGTTATGCAGAACATAATCCACTCAGTTCTTGAAACTCAA 531
||||||||||||| | ||||| || || |||||| |||||||||| ||||||||||||
Sbjct 484 GATGGGAAGAAGATGATGACATTTTTGGAGAACACGATCCACTCAGGTCTTGAAACTCAT 543
Query 532 AGAAAAGAGTGGGGAGAATTTCTTGATGAGTTGAGCAAAGATGGGAAGAAGACAATGACG 591
||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||
Sbjct 544 AGAAAAGAGTGGGGAGAGTTTATTGATGAGTTGAGCAAAGATGGGAAGAAGATGATGACG 603
Query 592 GAATTAGATGGTATGATCTGCTCACAACTTGGAACTCTGAGGGACAACATGCGCCACAAT 651
|||| || |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 604 AAATTGGACGGTATGATCTGCTCACAACTTGGAACTCTGAGAGACAACATGCGCCTCAAT 663
Query 652 GTTGACGAGATATGGCAAGAGCTCCGAGATGAGTTGAGATCTAAAGTCGACGAGGATATC 711
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 664 GTTGACGAGATATGGCAAGAGCTCCGAGATGAGTTAAGATCTAAAGTCGATGAGGATATC 723
Query 712 AAAGCTTCGAGACAAGATCTAAACAAAGATGTTAAATCTGTGGCCGATCAACTCCGCGAG 771
||||||||| |||||||||| ||||||||||| | |||||||||||| |||||||| |||
Sbjct 724 AAAGCTTCGGGACAAGATCTTAACAAAGATGTCAGATCTGTGGCCGACCAACTCCGTGAG 783
Query 772 ACCTACCTTGCCGTCCAAGAAACCATCAAAGAAGCCAAGACCCACGAAACCTACCTTATC 831
||||| |||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||
Sbjct 784 ACCTATCTTGCCGTCCAAGAAATCATCAAAGAAGCCAAGGCCCACGAGACCAACCTTATC 843
Query 832 AACCAAAACAATAGACGGGTGATAAGAGGCGAGGACGTTGAGGGATTTACCGAGCTGAGG 891
||||||| |||||||||||||||||||| || || |||||||||||| | |||||||||
Sbjct 844 GACCAAAAAAATAGACGGGTGATAAGAGGAGAAGAGGTTGAGGGATTTGCTGAGCTGAGG 903
Query 892 GAGCAAGTGCAAC-AACTGGCGTTTGAGGCGGAGATTACCGCAGAGGAGCTCTCAAGTGC 950
|||||||||| | || ||||| ||||||| |||||| | || |||||||||||| ||||
Sbjct 904 GAGCAAGTGCGGCGAA-TGGCGGTTGAGGCAGAGATTGCTGCCGAGGAGCTCTCACGTGC 962
Query 951 GACGGTGGAGTTGGTGGAGGCAGGGATCGAGCAATGGGAGGAGGACAACTTCGACTATAT 1010
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 963 GACTGTGGAGTTGGTGGAGGCAGGGATCCAGCAATGGGAGGAGGACAACTTCGACTATCT 1022
Query 1011 TAC-TACCCTCCGTCACATGTATCTCGATCATATCTAG 1047
||| | |||||| || |||||||||| |||| | ||||
Sbjct 1023 TACCT-CCCTCCCTCTCATGTATCTCAATCACAACTAG 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5