BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20990.3
Length=2222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480951 jgi|Araly1|480951|fgenesh2_kg.4__11__AT2G20990.1 1561 0.0
> Ahg480951 jgi|Araly1|480951|fgenesh2_kg.4__11__AT2G20990.1
Length=1967
Score = 1561 bits (845), Expect = 0.0
Identities = 1040/1126 (92%), Gaps = 46/1126 (4%)
Strand=Plus/Plus
Query 1071 GAGCAAATCAAGGATCAAGTTGCGAACATGTATCTCTGGCCTAAGACCCTTGTAGTTCCA 1130
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 886 GAGCAAATCAAGGATCAAGTTGCGAACATGTATCTCTGGCCGAAGACCCTTGTAGTTCCG 945
Query 1131 ATCCTTGACCCTGC-AAAGGCGTTCAGAAGGCCTGTTGGAATTGTCCATGTGAAAGTTGT 1189
|||||||||||||| ||| || |||||||||||||||||||| |||||||| ||||||||
Sbjct 946 ATCCTTGACCCTGCGAAA-GCATTCAGAAGGCCTGTTGGAATCGTCCATGTAAAAGTTGT 1004
Query 1190 GAGGGCTGTGGGGCTGAGGAAAAAAGATCTGATGGGCGGGGCAGATCCATTCGTGAAAAT 1249
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1005 GAAGGCTGTGGGGCTGAGGAAAAAAGATCTGATGGGTGGGGCAGATCCATACGTGAAAAT 1064
Query 1250 CAAGCTCTCTGAAGATAAGATTCCTTCTAAGAAGACAACAGTTAAACACAAGAATTTGAA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 CAAGCTCTCTGAAGATAAGATTCCTTCTAAGAAGACAACAGTTAAACACAAGAATTTGAA 1124
Query 1310 TCCTGAATGGAATGAGGAGTTCAAATTCTCGGTCAGAGATCCCCAGACTCAGGTTCTAGA 1369
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCCTGAATGGAACGAGGAGTTCAAATTCTCGGTCAGAGATCCCCAGACTCAGGTTCTAGA 1184
Query 1370 GTTCAGTGTGTATGACTGGGAACAGGTTGGGAATCCCGAGAAGATGGGTATGAATGTATT 1429
||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1185 GTTCAATGTGTATGACTGGGAACAGGTTGGGAAGCACGATAAGATGGGTATGAATGTATT 1244
Query 1430 AGCTCTGAAAGAAATGGTGCCTGACGAACATAAAGCATTCACCTTGGAACTGCGTAAGAC 1489
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1245 AGCTCTGAAAGAAATGGTGCCTAACGAACATAAAGCATTCACCTTGGAACTGCGTAAGAC 1304
Query 1490 TCTGGACGGCGGTGAAGATGGGCAGCCTCCTGACAAGTATAGGGGGAAGCTGGAGGTTGA 1549
|||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct 1305 TCTGGACGGCGGTGAAGAAGGGCAGACT---GACAAGTATAGGGGGAAGCTGGAGGTCGA 1361
Query 1550 ACTCTTGTATAAGCCATTCACGGAGGAAGAAATGCCCAAAGGCTTTGAAGAAACGCAAGC 1609
||||||||||||||||||||||||||||||||||| || || | | | | |
Sbjct 1362 ACTCTTGTATAAGCCATTCACGGAGGAAGAAATGC--AAT--CTGT-A-----C--A-G- 1407
Query 1610 CGTGCAGAAAGCTCCAGAAGGCACACCGGCTGCTGGAGGAATGCTTGTGGTAATAGTGCA 1669
| || ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1408 -----A-AA-GCTCCAGAAGGCACACCGGCTACTGGAGGAATGCTTGTGGTAATAGTGCA 1460
Query 1670 TTCGGCTGAGGATGTTGAAGGAAAGCACCATACCAATCCTTACGTGCGCATCTATTTCAA 1729
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1461 TTCGGCTGAGGATGTTGAAGGAAAGCACCATACGAATCCTTACGTGCGCATCTATTTCAA 1520
Query 1730 AGGAGAAGAGAGAAAAACAAAGCACGTGAAGAAGAACAGAGACCCAAGGTGGAATGAGGA 1789
||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1521 AGGGGAGGAGAGAAAAACGAAGCAAGTGAAGAAGAACAGAGACCCAAGGTGGAATGAGGA 1580
Query 1790 GTTCACCTTTATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTTGAAGTGCTGAG 1849
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1581 GTTCTCCTTCATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTGGAAGTGCTGAG 1640
Query 1850 CACCTCTTCCAGGATAGGTCTATTGCATCCCAAGGAAACACTGGGGTATGTGGATATTCC 1909
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1641 CACCTCTTCCAGGATAGGTTTATTGCATCCCAAGGAAACACTGGGGTACGTGGATATTCC 1700
Query 1910 AGTGGTGGACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAA 1969
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 GGTGGTGGACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAA 1760
Query 1970 GAACGGAAAGATCCAAATCGAGCTCGAGTGGCGAACTGCCTCTTGATTTCTGAGTT-GAT 2028
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |
Sbjct 1761 GAACGGAAAGATCCAAATCGAGCTTGAGTGGCGAACTGCCTCTTGATTTCTGA-TTCGTT 1819
Query 2029 TCGAGAACAAACAAAGAGATAATTGGTTTGATGTTGTTAAAAACTATGTGTTGTTGTACA 2088
|||||||||||||||||||| ||||||||||| | | ||| | || |||
Sbjct 1820 TCGAGAACAAACAAAGAGATCATTGGTTTGAT------A-----T-TGT-T-GT---ACA 1862
Query 2089 AAATGGGCTTTAACTCTTAAAAACCAACATTCAGATTTGCAGAGCCTTCTTTTATTTGGA 2148
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1863 AAATGGGCTTTAACTCTGAAAA-CCATCATTCAGATTTGCAGAGCCTTCTTTTATTTGGA 1921
Query 2149 TTTGTGTGTCTTCGACTTCTCTTTTCTATGAAATTCGGTAGTGTGA 2194
||||||||| ||| ||||||||| ||||||| ||||||||||||||
Sbjct 1922 TTTGTGTGTTTTCAACTTCTCTTCTCTATGATATTCGGTAGTGTGA 1967
Score = 1203 bits (651), Expect = 0.0
Identities = 690/709 (97%), Gaps = 2/709 (0%)
Strand=Plus/Plus
Query 250 TTGTTGGATCTGAAACGGAAATCAAAATGGGCTTTTTCAGTACGATACTAGGATTTTGTG 309
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 179 TTGTTGGATCTGAAACGGAAATCAAGATGGGTTTTTTCAGTACGATACTAGGGTTTTGTG 238
Query 310 GATTTGGAGTTGGGATTTCAT-TGGGACTTGTTATTGGTTACGTTCTCTTCGTCTACTTG 368
||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 239 GATTTGGAGTTGGGATTTC-TCTGGGACTTGTTATTGGTTACGTTCTATTCGTCTACTTG 297
Query 369 CTCCCCAACGACGTCAAGGATCCTGAAATTCGTTCAATAGCTGACCAAGATCCCAAAGCT 428
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 298 CTGCCCAACGACGTCAAGGATCTTGAAATTCGTTCAATAGCTGACCAAGATCCCAAAGCT 357
Query 429 ATGCTACGGATGCTTCCAGAGATACCTCTATGGGTCAAAAATCCGGATTTCGATCGTGTT 488
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 ATGCTACGGATGCTTCCAGAGATACCTCTATGGGTCAAAAATCCCGATTTCGATCGTGTT 417
Query 489 GACTGGATAAACAGATTTCTCGAGTACATGTGGCCTTATCTCGACAAGGCCATATGTAAG 548
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACTGGATTAACAGATTTCTCGAGTACATGTGGCCTTATCTCGACAAGGCCATATGTAAG 477
Query 549 ACTGCAAAGAATATAGCAAAACCGATCATTGAGGAGCAGATACCAAAGTACAAGATTGAC 608
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTGCAAAGAATATAGCAAAGCCGATCATTGAGGAGCAGATACCAAAGTACAAGATTGAC 537
Query 609 TCTGTTGAATTTGAAACACTTACTCTAGGCTCTTTACCCCCTACATTTCAAGGGATGAAA 668
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 TCTGTTGAATTTGAAACACTTACACTAGGCTCTTTACCCCCTACATTTCAAGGGATGAAA 597
Query 669 GTTTATCTCACGGATGAGAAAGAGTTGATTATGGAACCATGCTTGAAATGGGCCGCAAAT 728
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 GTTTATCTCACGGATGAGAAAGAGTTGATTATGGAACCATGCTTGAAATGGGCCTCAAAT 657
Query 729 CCCAATATCTTGGTTGCCATCAAGGCATTTGGGTTGAAGGCAACAGTTCAGGTGGTCGAT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCCAATATCTTGGTTGCCATCAAGGCATTTGGGTTGAAGGCAACAGTTCAGGTGGTCGAT 717
Query 789 CTGCAAGTTTTTGCTCAGCCTCGTATCACTCTCAAGCCATTAGTTCCAAGTTTCCCTTGT 848
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 718 CTGCAAGTTTTTGCACAGCCCCGTATCACTCTCAAGCCATTAGTCCCAAGTTTTCCTTGT 777
Query 849 TTTGCCAATATCTATGTGTCTCTTATGGAGAAGCCACATGTTGATTTTGGACTGAAGCTT 908
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 TTTGCCAACATCTATGTGTCTCTTATGGAGAAGCCACACGTTGATTTTGGACTGAAGCTT 837
Query 909 GGTGGAGCAGATCTTATGTCAATCCCTGGCCTCTACAGATTTGTTCAGG 957
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGTGGAGCAGATCTTATGTCAATCCCTGGCCTCTACAGATTTGTTCAGG 886
Score = 196 bits (106), Expect = 5e-49
Identities = 158/180 (88%), Gaps = 15/180 (8%)
Strand=Plus/Plus
Query 27 TTGCTTGCCTTCTGGGCTTCACGATTCTCACGACATCTGTTTATCTTCTCCGATTTCCAC 86
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGCTTGCCTCCAGGGCTTCACGATTCTCACGACATCTGTTTATCTTCTCCGATTTCCAC 60
Query 87 GTCCATGGATCTCAGTCAATGTTCCTTAATCTCTCTTTTCGATTAGTCCAATCTCCACTA 146
||||||||||||||||||||| ||||||||||||||| ||||||||| |||| || | |
Sbjct 61 GTCCATGGATCTCAGTCAATGCTCCTTAATCTCTCTTACCGATTAGTC-AATC-CC-C-A 116
Query 147 ATCTCTGACCTCAGATCGCTTCCGACGCCG-CTGAACTGTGTCCGTCTTGATCTGTGTTT 205
||| || || | | ||||||||||| | ||||| |||||||||||||||||||||
Sbjct 117 --CTCAGA--TC-G---G-TTCCGACGCCGGC-GAACTCTGTCCGTCTTGATCTGTGTTT 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83646178020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5