BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21045.1

Length=731
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899363 jgi|Araly1|899363|Al_scaffold_0004_13                      654    0.0  


> Ahg899363 jgi|Araly1|899363|Al_scaffold_0004_13
Length=423

 Score =  654 bits (354),  Expect = 0.0
 Identities = 400/423 (95%), Gaps = 0/423 (0%)
 Strand=Plus/Plus

Query  94   ATGGAGGAAACAAAACCAAAGACCGTTGAAGATGTTGAGACCGTTGATGTTTATACAGCT  153
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct  1    ATGGAGGAAACAAAACCAAAGACAGTTGAAGATGTTGAGACGGTTGATGTTTACACAGCT  60

Query  154  AAAGGCTTTCTTAGTACTGGTCACCGATATCTCGACGTAAGGACAAATGAAGAATTTGCC  213
            ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct  61   AAAGGTTTTCTTAGTACTGGTCATCGATATCTCGATGTAAGGACAAATGAAGAATTCGCC  120

Query  214  AAGAGTCATGTTGAGGAGGCTTTGAACATTCCTTATATGTTCAAAACAGATGAAGGTAGG  273
            ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  121  AAGAGTCATGTTGAGGATGCTTTGAACATTCCTTATATGTTCCAAACAGATGAAGGTAGG  180

Query  274  GTTATAAATCCTGATTTCCTTTCTCAAGTGGCATCGGTTTGCAAGAAAGATGAACATTTG  333
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  181  GTTATAAATCCTGATTTTCTTCCTCAAGTGGCATCGGTTTGCAAGAAAGATGAACATATG  240

Query  334  ATCGTGGCTTGTAACGCTGGAGGAAGAGGAAGTCGTGCTTGCGTTGATCTTCTTAACGAG  393
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |
Sbjct  241  ATCGTGGCTTGTAACGCTGGAGGAAGAGGAAGTCGTGCTTGTGTTGATCTTCTCAATGCG  300

Query  394  GGGTACGACCATGTGGCTAACATGGGGGGAGGCTACTCGGCTTGGGTTGACGCTGGATTC  453
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  GGGTACGAGCATGTGGCTAACATGGGGGGAGGCTACTCGGCTTGGGTTGATGCTGGATTC  360

Query  454  GCCGGGGACAAACCCCCGGAAGACCTCAAGATTGCTTGCAAGTTCAGGCCAAAGGAAAAC  513
            ||||| ||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||
Sbjct  361  GCCGGCGACAAACCCCCGGAAGAGCTCAAGATTGCTTGCCAGTTCCGACCAAAGGAAAAC  420

Query  514  TAA  516
            |||
Sbjct  421  TAA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26914779402


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5