BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21050.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932026 jgi|Araly1|932026|scaffold_400014.1 2455 0.0
Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1 553 2e-156
> Ahg932026 jgi|Araly1|932026|scaffold_400014.1
Length=1492
Score = 2455 bits (1329), Expect = 0.0
Identities = 1427/1476 (97%), Gaps = 0/1476 (0%)
Strand=Plus/Plus
Query 194 AGAGAGATGGAGAACGGTGAGAAAGCAGCTGAGACTGTCGTTGTTGGGAACTATGTTGAG 253
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 15 AGAGAGATGGAGAACGGTGAGAAAGCAGCTGAGACTGTTGTTGTTGGGAACTATGTTGAG 74
Query 254 ATGGAGAAGGATGGTAAAGCTTTAGACATCAAATCTAAGCTATCTGACATGTTTTGGCAT 313
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 75 ATGGAGAAGGATGGTAAAGCTTCAGACATCAAATCTAAGCTCTCTGACATGTTTTGGCAT 134
Query 314 GGTGGCTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACAAGTGCTG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GGTGGCTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACAAGTGCTG 194
Query 374 TTGACACTGCCATACTCGTTCTCACAGCTGGGGATGCTCTCAGGGATTCTGTTTCAGCTC 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TTGACACTGCCATACTCGTTCTCACAGCTGGGGATGCTCTCAGGGATTCTGTTTCAGCTC 254
Query 434 TTTTATGGCATCTTAGGTAGTTGGACTGCTTACCTCATCAGTATTCTCTATGTTGAATAC 493
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 255 TTCTATGGCATCTTAGGTAGTTGGACTGCTTACCTCATCAGCATTCTTTATGTTGAATAC 314
Query 494 AGAACCAGAAAGGAAAGAGAGAAAGTTAACTTCAGAAACCATGTCATTCAGTGGTTTGAG 553
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGAACTAGAAAGGAGAGAGAGAAAGTTAACTTCAGAAACCATGTCATTCAGTGGTTTGAG 374
Query 554 GTTCTTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACC 613
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 375 GTTCTTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCTTTTAACTGCACA 434
Query 614 TTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGCAACATATATTACATA 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGCAACATATATTACATA 494
Query 674 AATGATAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AATGATAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACA 554
Query 734 GTCTTTATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACC 793
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GTCTTCATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACC 614
Query 794 ACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGGTAGAAGGAGTG 853
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 615 ACTTACACTGCTTGGTACCTCACCATTGCCTCCATCCTCCATGGACAGGTACAAGGAGTG 674
Query 854 AAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTAC 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTAC 734
Query 914 ACATTCGGTGGACATGCTGTTACTGTAGAGATAATGCATGCTATGTGGAAACCTCAGAAG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 735 ACATTCGGTGGACATGCTGTTACTGTAGAGATAATGCATGCTATGTGGAAACCGCAGAAG 794
Query 974 TTCAAGTCCATATACCTGTTTGCAACACTCTACGTGCTGACGCTAACGCTGCCTTCTGCG 1033
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TTCAAGTCCATATACCTCTTTGCAACACTCTACGTGCTGACGCTAACGCTGCCTTCTGCG 854
Query 1034 TCTGCGGTTTATTGGGCGTTTGGTGATTTGCTTCTAAACCATTCAAACGCATTTGCTCTT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TCTGCGGTTTATTGGGCGTTTGGTGATTTGCTTCTAAACCATTCAAACGCATTTGCTCTT 914
Query 1094 CTCCCAAAGAATCTTTACCGTGACTTTGCAGTTGTGCTTATGCTCATCCATCAGTTCATC 1153
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTCCCAAAGAATCTTTACCGTGACTTTGCAGTTGTGCTTATGCTCATCCATCAGTTCATT 974
Query 1154 ACCTTTGGTTTTGCTTGCACGCCACTCTACTTTGTGTGGGAGAAGCTAATAGGGATGCAT 1213
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 975 ACCTTTGGTTTTGCTTGCACGCCACTCTACTTTGTGTTGGAGAAGCTTATAGGGATGCAT 1034
Query 1214 GAGTGCAGAAGCATGTGTAAACGAGCCGCTGCGAGGCTCCCTGTCGTTATACCCATTTGG 1273
|||||| ||||||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct 1035 GAGTGCCGAAGCATGTGTAAACGAGCTGCCGCGAGGCTTCCTGTTGTTATACCCATTTGG 1094
Query 1274 TTTCTTGCTATCATATTCCCGTTCTTTGGTCCCATTAACTCAACCGTAGGATCTCTTCTC 1333
||||||||||||||||| || ||||| ||||||||||||||||| || |||||||| |||
Sbjct 1095 TTTCTTGCTATCATATTTCCTTTCTTCGGTCCCATTAACTCAACTGTTGGATCTCTACTC 1154
Query 1334 GTCAGCTTCACTGTCTACATCATCCCAGCACTAGCTCACATCTTCACCTTCCGCTCATCC 1393
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 1155 GTCAGCTTCACTGTCTACATCATCCCTGCACTAGCTCATATCTTCACCTTCCGCTCCTCC 1214
Query 1394 GCCGCACGTGAAAACGCTGTGGAGCAGCCACCAAGGTTTCTAGGACGATGGACTGGGGCA 1453
|||||||||||||| || ||||||||||| || |||||||||||||| |||||||||||
Sbjct 1215 GCCGCACGTGAAAATGCCGTGGAGCAGCCCCCGAGGTTTCTAGGACGGTGGACTGGGGCT 1274
Query 1454 TTCACGATCAATGCCTTCATAGTTGTGTGGGTGTTCATTGTTGGATTCGGGTTCGGTGGT 1513
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TTCACCATCAACGCCTTCATAGTTGTGTGGGTGTTCATTGTTGGATTCGGGTTCGGTGGT 1334
Query 1514 TGGGCTAGTATGATCAATTTTGTACACCAGATTGACACCTTTGGCCTCTTCACCAAATGC 1573
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1335 TGGGCTAGTATGATCAATTTTGTTCACCAAATTGACACCTTTGGCCTCTTCACCAAATGC 1394
Query 1574 TACCAATGCCCACCACCGGTTATGGTCTCACCTCCTCCAATCAGCCATCCTCACTTCAAT 1633
||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1395 TACCAATGCCCTCCACCGGTTATGGCCTCACCTCCTCCCATCAGCCATCCTCACTTCAAT 1454
Query 1634 CACACTCACGGCCTTTGAATTTTAAGCATCAAATCT 1669
|||||||| |||||||||||| |||||| | |||||
Sbjct 1455 CACACTCATGGCCTTTGAATTATAAGCAACGAATCT 1490
> Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1
Length=1669
Score = 553 bits (299), Expect = 2e-156
Identities = 597/736 (81%), Gaps = 39/736 (5%)
Strand=Plus/Plus
Query 308 TGGCATGGTGGCTCTGCT-TATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACA 366
|||||||| || |||| | || ||||||||||| || |||||||| ||||||||||||||
Sbjct 137 TGGCATGGAGGTTCTG-TCTACGATGCTTGGTTTAGTTGTGCTTCAAATCAGGTGGCACA 195
Query 367 AGTGCTGTTGACACTGCCATACTCGTTCTCACAGCTGGGGATGCTCTCAGGG-ATTCTGT 425
||| ||||||||| | || |||||||||||||| || |||||| | || ||| ||| |||
Sbjct 196 AGTTCTGTTGACATTACCGTACTCGTTCTCACAACTTGGGATGGTGTC-GGGAATTTTGT 254
Query 426 TTCAGCTCTTTTATGGCATCT--TAGGTAGTTGGACTGCTTACCTCATCAGTATTCTCTA 483
|||| ||||||||||| | || | || |||||||||||||| ||||| ||| |||| ||
Sbjct 255 TTCAACTCTTTTATGG-A-CTAATGGGAAGTTGGACTGCTTATCTCATTAGTGTTCTTTA 312
Query 484 TGTTGAATA-CAGAAC-CAG-AAAGGAAAGAGAGAAAGTT-AACTTCAGAAACCATGTCA 539
|||||||| | |||| | | ||| ||| |||| ||| || | ||| | || || || |
Sbjct 313 CGTTGAATATC-GAACTC-GTAAA-GAACGAGA-AAAATTCGATTTCCGTAATCACGTTA 368
Query 540 TTCAGTGGTTTGAGGTTCTT-GATGGATTGCTT-GGGAAGCATTGGAGGAATGTTGG-TT 596
||||||||||||||| | || ||||||||| || ||||| ||||||||||| |||| ||
Sbjct 369 TTCAGTGGTTTGAGG-TGTTAGATGGATTG-TTGGGGAAACATTGGAGGAACCTTGGATT 426
Query 597 TAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCA 656
| |||||||||||| || |||||||||||||| || ||||| ||||| |||||||| |
Sbjct 427 GA-TCTTTAACTGCACTTTTCTTCTCTTTGGATCCGTTATTCAGCTCATTGCTTGTGCTA 485
Query 657 GCAACATATATTACATAAATGA-TAATCTGGACAAGAGGACATGGACATACATATTTGGA 715
|||| |||||||| || ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 486 GCAATATATATTATATTAATGACAAAT-TGGACAAGAGGACATGGACATACATATTTGGG 544
Query 716 GCATGTTGTGCAACCACAGTCTTTATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTT 775
|| ||||||||||| || || |||||||||||||||||||| || || || ||||| ||
Sbjct 545 GCGTGTTGTGCAACAACTGTTTTTATTCCTTCCTTCCACAATTATAGAATTTGGTCATTC 604
Query 776 CTTGGACTCT-TGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTA-TCCTCC 833
|| |||||| | ||||||||||||||| ||||||| ||||||||||| || | |||| |
Sbjct 605 CTCGGACTCGCT-ATGACCACTTACACTTCTTGGTATCTCACCATTGCTTC-ACTCCTTC 662
Query 834 ATGGACAGG-TAGAAGGA-GTGAAGCATTCAGGACCAAGCA-AGCTGGTT-TTATACTTC 889
|||| |||| | || ||| ||||| || || || |||| || | |||| || ||||||
Sbjct 663 ATGGCCAGGCT-GA-GGATGTGAAACACTCGGGTCCAACCACAA-TGGTGCTT-TACTTC 718
Query 890 ACAGGGGCCACAAACATTCTTTACACATTCGGTGGACATGCTGTTACTGTAGAGATAATG 949
|| || ||||| |||||||| || || ||||||||||| || || || || |||||||||
Sbjct 719 ACCGGAGCCACCAACATTCTCTATACCTTCGGTGGACACGCCGTCACAGTGGAGATAATG 778
Query 950 CATGCTATGTGGAAACCTCAGAAGTTCAAGTCCATATACCTGTTT-GCAAC-ACTCTACG 1007
|| || ||||||||||| || ||||||||| | ||||| || | || || | | || |
Sbjct 779 CACGCGATGTGGAAACCACAAAAGTTCAAGGCGATATATCTAACTAGCGACCA-TATATG 837
Query 1008 TGCTGACGCTAACGCT 1023
| || |||||||||||
Sbjct 838 TACTAACGCTAACGCT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5