BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21070.3
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480956 jgi|Araly1|480956|fgenesh2_kg.4__16__AT2G21070.1 2076 0.0
> Ahg480956 jgi|Araly1|480956|fgenesh2_kg.4__16__AT2G21070.1
Length=1850
Score = 2076 bits (1124), Expect = 0.0
Identities = 1357/1464 (93%), Gaps = 38/1464 (3%)
Strand=Plus/Plus
Query 83 GTTTCAATGCGGAGTGGGAAGAAGAGAGCTCGCTCAGAACCTGGATCCACAAAGCAACCC 142
||||| ||||| | ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 35 GTTTCGATGCGTAACGGGAAGAAGAGAGGTCGCTCAGAACCTGGAACCACAAAGCAACCC 94
Query 143 CGAAGCAAATACTCCGACAACCCACCGGATTTTGCCTCGTTAGCGTCTCTTTACCCATCT 202
|||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 95 CGAAACAAATACTCCGATAACCCACCCGATTTTGCCTCGTTAGCGTCTCTTTACCCTTCT 154
Query 203 TTCAAGCCCTTTGTTTTCTTCTCCGGTAGTCGAGCTCGCATCGACTGGACCGATTACAAC 262
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 155 TTCAAGCCCTTTGTTTTCTTCTCCGGTGGTCGAGCTCGCATCGACTGGACCGATTACAAC 214
Query 263 GCAACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTGGTGGATT 322
|||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 215 GCAACCAGAGAGCTCACTCGTATCCTCCTTCTACACGACCACGGCGTCAACTGGTGGATT 274
Query 323 CCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAAT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAAT 334
Query 383 GATCTTTTGTCCTCTG-GGATCATTCAAAGTTTGGGTGGTGATGGAAGTAAAGTAAAGGG 441
|||||||||||||||| || ||||||||||||| | |||| || | ||||||||||
Sbjct 335 GATCTTTTGTCCTCTGAGG-TCATTCAAAGTTT--G-GGTG--GG--G--AAGTAAAGGG 384
Query 442 CTTTGACATTGGTACTGGGGCTAATTGCATTTATCCTCTCCTTGGTGCATCTCTTTTTGG 501
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 385 CTTTGACATTGGTACTGGGGCCAATTGCATTTATCCTCTCCTTGGTGCATCTCTTTTTGG 444
Query 502 TTGGAGTTTTGTTGGCTCAGATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGT 561
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 445 TTGGAGTTTTGTTGGCTCAGATTTTACTGCTGTTGCTCTAGAATGGGCAGAGAAGAATG- 503
Query 562 TC-AAAGTAATCCCCATTTTTCAGACCTTATCGAGATCAGAGACTCTAAAGTTCCTCCAC 620
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 504 TCAAAAGTAATCCCCATTTTTCAGACCTTATCGAGATCAGAGACTCTAAAGTTCTTCCAC 563
Query 621 AGTGTTCCTCTGTCCCTGAGGTTGAAAATACAGAGAGGGAGAAAACCATACAGGAGGAAG 680
|| |||||||||| || | ||||| ||| |||||||||||||||||
Sbjct 564 AGAGTTCCTCTGTTCC--------------C-GAGAGTGAGTTAACCATACAGGAGGAAG 608
Query 681 CTGAAATTTCCGCCACGGTTAAGTCTGATT-ATC------ATGACAACAAGAGTTTTATT 733
| |||||||||||||||||| ||||| ||| ||| |||||||| |||| | || |
Sbjct 609 CCGAAATTTCCGCCACGGTTCAGTCT-ATTAATCTTGTAGATGACAACCAGAGCTATACT 667
Query 734 GAACCAGCTGTACTACTCGGTGTTGTCAAGGAAAACGAAACATTCGACTTCTGTATGTCC 793
|||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 668 GAACCAGCTGTATTACTCGGTGTTGTCAAGGAAAATGAAACGTTCGACTTCTGTATGTCC 727
Query 794 AATCCTCCATTTTTTGAGACCTTTGAAGAAGCGGGGCTAAATCCTAAAACTTCATGCGGT 853
||||||||||||||||||||||| |||||| | || || |||||||||||||||||||||
Sbjct 728 AATCCTCCATTTTTTGAGACCTTCGAAGAATCAGGACTTAATCCTAAAACTTCATGCGGT 787
Query 854 GGAACTCCTGAAGAGATGGTTTGCAATGGTGGGGAGCAAGCTTTTGTGTCACGTATTATC 913
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 788 GGAACTCCTGAGGAGATGGTTTGCAATGGTGGGGAGCAAGCTTTCGTGTCTCGTATTATC 847
Query 914 AAAGATAGCGCTGTACTGAGGCAAAGATTCAGGTGGTACACTTCAATGCTTGGAAAGAAG 973
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 848 GAAGATAGCACTGTACTGAGGCAAAGATTCAGGTGGTACACTTCAATGCTTGGGAAGAAG 907
Query 974 GCTAACCTCAAACTCTTGATATCTAAGCTTTGGGAAGTGGGAGTGACCATTGTGAAGACC 1033
||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 908 GCTAACCTCAAACTCTTGATATCTAAGCTTTGGCAAGTGGGTGTAACCATTGTGAAGACC 967
Query 1034 ACTGAATTTGTCCAAGGTCAAACATCCCGTTGGGGCCTCGCTTGGTCGTTTATGCCAATA 1093
||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| | |
Sbjct 968 ACTGAATTTGTCCAAGGTCAAACATCCCGGTGGGGCCTCGCCTGGTCCTTCATGCCCACA 1027
Query 1094 GCTAGGAAGATTATAGCACCTCCTGTAGTCAAAAAGAGCGTTCTTTCTTTTATGCTTGAG 1153
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1028 GCTAGGAAGATTATAGCACCTCCTGTAGTCAAAAAGAGTGTTCTTTCTTTTATGCTTGAG 1087
Query 1154 TGCATTAAACGGCAGTACAGTGCCGTAGATGTGCTGCAATCAGTTGAAGAATTCTTCAAG 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GGCATTAAACGGCAGTACAGTGCCGTAGATGTGCTGCAATCAGTTGAAGAATTCTTCAAG 1147
Query 1214 AGCTGTGGCGCCTCGTGCAAGTTAAACTCTTCTACATTTTCTGTTGACATTGTTGCATCT 1273
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AGGTGTGGTGCCTCGTGCAAATTAAACTCTTCTACATTTTCTGTTGACATTGTTGCATCT 1207
Query 1274 AATGACCAGTGCAACACAATCTCAAAGAATGACATTGCAGATGTAGATAGTGTAAGAAGC 1333
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1208 AATGACCAGTGCAACTCAATCTCAAAGAATGGCATTACAGATGTAGATAGTGTAAGAAGC 1267
Query 1334 CATGGATATGAAAAACAGTCACTGGATGGCTCCAGTTTGCAAGTCCCTGAATATAACCTA 1393
|| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1268 CACGGATATGACAAACAGTCACTGGATGGATCCAGTTTGCAAGTCCCTGAAGATAACCTA 1327
Query 1394 TCTTTCCGCATCTTGGTGTTCCAACAGATGCCAGGAACGTTGCTTATAAAAGGATCATTG 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TCTTTCCGCATCTTGGTGTTCCAACAGATGCCAGGAACGTTGCTTATAAAAGGATCATTG 1387
Query 1454 CAGCAGAAAGATAGTCCCCTCTCAGGATTGTTCTCCAG-GGTCTTCGGTTCGTTGGAAGA 1512
||||| |||||||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct 1388 CAGCAAAAAGATAGTCCCCTCTCAGGGTTGTTCTC-AGTGGTCTTCGGTTCTTTGGAAGA 1446
Query 1513 AAGTTTGAAGTCCAAATTTTGCCG 1536
|||||||||||| |||||||||||
Sbjct 1447 AAGTTTGAAGTCTAAATTTTGCCG 1470
Score = 158 bits (85), Expect = 2e-37
Identities = 112/124 (90%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 1536 GACTTACCTTACGGGGAAAGATACACAGAGCCAAGTTGGATTACCCAAAAGTAGTAAAGg 1595
|||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1732 GACTTACCTTGCGGGTAAAGATACAC--AGCCAAGTTGGATTACCCAAAAGTAGTAAAGG 1789
Query 1596 agagagagagagagagGGTTCTTCACTTCACGTGACTAAGCAAG-TTACTTTTGCCTTTC 1654
||| | | |||||||||||||||||||||||||||| ||||||| || || |||| ||||
Sbjct 1790 AGA-A-AAAGAGAGAGGGTTCTTCACTTCACGTGACAAAGCAAGCTT-CTATTGCTTTTC 1846
Query 1655 TCTC 1658
||||
Sbjct 1847 TCTC 1850
Score = 60.2 bits (32), Expect = 5e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 21 ACTCCAGTTCACCGCCGTTGTCTTCTCTCTCACCG 55
|||||| ||||||||||||||||||||||||||||
Sbjct 1 ACTCCAATTCACCGCCGTTGTCTTCTCTCTCACCG 35
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5