BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21100.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480959 jgi|Araly1|480959|fgenesh2_kg.4__19__AT2G21100.1 1007 0.0
> Ahg480959 jgi|Araly1|480959|fgenesh2_kg.4__19__AT2G21100.1
Length=676
Score = 1007 bits (545), Expect = 0.0
Identities = 635/677 (94%), Gaps = 12/677 (2%)
Strand=Plus/Plus
Query 1 AAACTCATTTTACTCTCACAATTACAAACACTTTGTTACAATTTAGACCCCACCAGAAAA 60
|||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 1 AAACTCATTTTACTTTCACAGTTACAAACACTTTGTTACATTTTAGACCCCATCAGAAAA 60
Query 61 AAGCGAAAATGGCAAAAGAGGAATATGTATCAAGAATGTTGGTTATGTTAATAATGATAA 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AA-TGAAAATGGCAAAAGAGGAATATGTATCAAGAATGTTGGTTATGTTAATAATGATAA 119
Query 121 TGCCACTGGTTGCTCAGGGATCGAGACTGCATAGTTGGGCTAATCGGCTTGAGGAAACAG 180
||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 120 TGCCACTGGCTGCTCGGGGATCGAGACTGTACAGTTGGGCTAATCGGCTTGAGGAAACAG 179
Query 181 GGAAGGACAAGGTAACAAACCTTCAGTTCTATTTCCATGACACCTTGAGCGGCAAGAATC 240
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGAAGGAGAAGATAACAAACCTTCAGTTCTATTTCCATGACACCTTGAGCGGCAAGAATC 239
Query 241 CAACCGCAGTTAAGGTGGCTCAGGGCACAGACACCGAAAAATCCCCGACGCTGTTCGGCG 300
|||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 CAACGGCCGTTAAAGTGGCTCAGGGCACAGACACCGACAAATCCCCGACGCTGTTCGGCG 299
Query 301 CTGTGTTCATGGTCGACGACGCTCTCACCGAGACCGCTGATCCAAAATCCAAACTCGTTG 360
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 300 CTGTGTTCATGGTCGACGACGCTCTAACGGAGACCGCTGATCCAAAATCCAAACTCGTGG 359
Query 361 GACGGGCGCAAGGCCTTTACGGTTCTTCATGTAAAGAAGAAGTAGGTTTGATAATGGCCA 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 GACGGGCGCAAGGCCTTTACGGTTCTTCATGTAAAGAAGAGGTAGGTTTGATAATGGCCA 419
Query 421 TGAGCTTCTGTTTCGAGGACGGTCCTTACAAGGACAGCACCATAAGCATGATCGGGAAGA 480
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 420 TGAGCTTCTGTTTCGAGGATGGTCCATACAAGGACAGTACCATAAGCATGATCGGGAAGA 479
Query 481 ACTCCGCGATGAACCCAATCCGAGAAATGCCTATTGTTGGCGGCACGGGAATGTTCCGGA 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 480 ACTCCGCGATGAACCCAATCAGAGAAATGCCTATTGTTGGCGGCACGGGAATGTTCCGAA 539
Query 541 TGGCTCGTGGCTATGCTATTGCCCGGACTAATTGGTTTGATCCCAAAACCGGTGATGCCA 600
||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 540 TGGCTCGTGGCTACGCTATTGCCCAGACCAATTGGTTTGATCCCAAGACCGGTGATGCCA 599
Query 601 TCGTTGGCTATAACGTTACCATTATGCACTAGAAA-----GGCTTTGT---A-T--CATA 649
|||||||||||||||||||| || ||||||||||| |||||||| | | ||||
Sbjct 600 TCGTTGGCTATAACGTTACCGTTGTGCACTAGAAAATTAAGGCTTTGTTTCACTTTCATA 659
Query 650 TAATACGGCGACGTTTT 666
|||||||||||||||||
Sbjct 660 TAATACGGCGACGTTTT 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5