BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21110.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480960 jgi|Araly1|480960|fgenesh2_kg.4__20__AT2G21110.1 789 0.0
> Ahg480960 jgi|Araly1|480960|fgenesh2_kg.4__20__AT2G21110.1
Length=564
Score = 789 bits (427), Expect = 0.0
Identities = 520/565 (92%), Gaps = 5/565 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAAGAATTTAGGATTAGTA--G-TTAGTTTTTATCTTTGCATCACGTTCGCACTC 57
|||| |||||| ||||||||||| | ||||| ||||||||||| |||| || ||||||
Sbjct 1 ATGGAGAAGAAAATAGGATTAGTAGGGTTTAGTCTTTATCTTTGCCTCACCTTTGCACTC 60
Query 58 GGCGAATACT-TTTCAGAAACTCGTCCAATCACACCGAAACAACTAGTGGTCACAAATCT 116
|||||||||| || || ||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 61 GGCGAATACTATTCCA-AAACTCGTCCATTCACACCGAAACAACAAGTGGTCACAAATCT 119
Query 117 CCATTTCTTCTTTCACGACACTCTCACCGCTCCAAACCCATCAGCCATCCTCATTGCCAA 176
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||
Sbjct 120 CCATTTCTTCTTTCACGACACTCTCACCGCCCCAAACCCATCAGCCGTCCTCGTCGCCAA 179
Query 177 GCCTACTCACACAAGAGGAGACAACGACTCTTCTCCCTCACCTTTCGGTTCTCTTTTTGC 236
|||||||| |||| |||||||||| ||||||||||||||||| ||||| |||||||| ||
Sbjct 180 GCCTACTCTCACAGGAGGAGACAAGGACTCTTCTCCCTCACCGTTCGGCTCTCTTTTCGC 239
Query 237 TCTCGACGACCCTCTCACCGTTGGACCAGACCCGAAATCCGAGAAGATCGGGAACGCTAG 296
||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||
Sbjct 240 TCTCGACGACCCTCTCACCATCAGACCGGACCCGAAATCCAAGAAGATCGGGAACGCTAG 299
Query 297 AGGGATGTACGTTTCCTCTGGAAAACATGTCCCCACGTTGACCATGTACGTCGACTTCGG 356
||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 300 AGGGATGTATGTTTCCTCCGGAAAACATGTTCCCACATTGACCATGTACGTCGACTTCGG 359
Query 357 GTTCACATCGGGCAAGTTTAACGGTAGTTCTATAGCCGTGTTTTCGAGGAATACGATAAC 416
|||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 GTTCACCGCCGGCAAGTTCAACGGTAGTTCTATCGCCGTGTTTTCGAGGAATACGATAAC 419
Query 417 GGAGAAAGAGAGGGAGGTTGCAGTTGTGGGAGGCCGAGGAAGGTTTAGGATGGCTAGAGG 476
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GGAGAAAGAGAGGGAACTTGCAGTTGTGGGAGGTCGAGGAAGGTTTAGGATGGCTAGAGG 479
Query 477 AGTGGCTCAACTCAATACATATTACGTTAACTTGACCAATGGGGATGCTATCGTTGAGTA 536
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 AGTGGGTCAACTCAATACATATTACGTTAACTTGACCAGTGGGGATGCTATCGTTGAGTA 539
Query 537 CAATGTCACTCTCTATCATTATTAA 561
||||||||||||||||||||||||
Sbjct 540 TAATGTCACTCTCTATCATTATTAA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5