BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21120.1
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480961 jgi|Araly1|480961|fgenesh2_kg.4__21__AT2G21120.1 2045 0.0
Ahg490637 jgi|Araly1|490637|fgenesh2_kg.7__70__AT4G38730.1 883 0.0
> Ahg480961 jgi|Araly1|480961|fgenesh2_kg.4__21__AT2G21120.1
Length=1609
Score = 2045 bits (1107), Expect = 0.0
Identities = 1276/1354 (94%), Gaps = 26/1354 (2%)
Strand=Plus/Plus
Query 341 TAGGG-GAATGGAGACGGACAATGGGAAGGGGTTGATACTAGCTGTAGCGTCAAGTGTTT 399
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TAGGGATAATGGAGTCGGACAATGGGAAGGGGTTGATACTAGCTGTAGCGTCAAGTGTTT 335
Query 400 TCATTGGTTCCAGCTTCATTCTTAAGAAGAAAGGTCTTAAGCGAGCTGGTGCTATTGGCA 459
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 336 TCATTGGTTCCAGCTTCATTCTTAAGAAGAAAGGTCTCAAACGAGCTGGTGCTATTGGTA 395
Query 460 CCCGAGCAGGATATGGAGGCTATACTTATTTATTAGAGCCGCTTTGGTGGGCAGGGATGG 519
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 396 CCCGTGCAGGATATGGAGGTTATACTTACTTATTAGAGCCGCTTTGGTGGGCAGGCATGG 455
Query 520 TTACTATGATTGTTGGAGAAGCTGCAAACTTTGTGGCTTACATTTATGCACCAGCTGTAC 579
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 456 TTACTATGATTGTTGGAGAAGCTGCAAACTTTGTGGCTTATATTTATGCTCCCGCTGTAC 515
Query 580 TCGTTACTCCTCTCGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTAT 639
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 516 TCGTTACTCCTCTTGGTGCATTAAGTATAATTATCAGTGCTGTTTTGGCACATTTCCTAT 575
Query 640 TGAAGGAAAAACTTAAGAAAATGGGGGTTCTCGGATGTGTGTCTTGCATTGTTGGGTCTG 699
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 576 TGAAGGAAAAACTTAAGAAAATGGGGGTTCTCGGATGTGTGTCTTGCATCGTTGGGTCTG 635
Query 700 TTGTTATTGTTATACACGCACCTAAGGAACAGACTCCTAATTCCGTTGAGGAAATATGGA 759
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 636 TTGTTATTGTCATACACGCACCTAAGGAGCAGACTCCTAATTCCGTTGAAGAAATATGGA 695
Query 760 ATCTGGCTACTCAGCCAGCTTTTCTAATCTACGTAGCCATAACCATGTCGATTGTCCTTG 819
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 ATTTGGCTACTCAGCCAGCTTTTCTAATCTACGTAGCCATAACCATGTCGATTGTCCTTG 755
Query 820 CTTTAATTCTGCATTTTGAACCCCTGTGCGGCCAAACAAACATTCTGGTTTATATTGGAA 879
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 756 CTTTAATTCTGCACTTTGAACCCCTGTGCGGCCAAACAAACATTCTGGTTTATATCGGAA 815
Query 880 TCTGTTCGTTAATGGGTGCTCTCACTGTTATGAGCATAAAAGCTATTGGAATTGCGATAA 939
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 816 TCTGTTCGTTAATGGGTGCTCTCACTGTTATGAGCATAAAGGCTATCGGAATTGCGATAA 875
Query 940 AATTAACAATGGAGGGAGTAAGCCAGATCGGGTATCCACAGACATGGCTTTTTGTCATGG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 AATTAACAATGGAGGGAGTAAGCCAGATCGGGTATCCACAGACATGGCTTTTTGTCATGG 935
Query 1000 TTGCAGTAACTTGTGTCGTTACACAATTGATTTACCTAAATAAGGCTTTGGACACATTCA 1059
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 936 TTGCAGTAACCTGTGTCGTTACACAATTGATTTATCTAAACAAGGCTTTGGACACATTCA 995
Query 1060 ACGCAGCCATTGTTTCTCCAGTATACTATGTAATGTTCACAACCCTCACAATTGTTGCTA 1119
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 996 ACGCAGCCATTGTTTCTCCAGTGTACTATGTAATGTTTACAACCCTCACAATAGTTGCTA 1055
Query 1120 GTGCAATAATGTTCAAGGACTGGTCTGGGCAAGACGCAGCCAGCGTAGCCTCTGAGTTAT 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GTGCAATAATGTTCAAGGACTGGTCTGGGCAAGACGCAGCCAGCGTAGCCTCTGAGTTAT 1115
Query 1180 GTGGATTCATCACTGTGCTCACAGGGACAATGATACTCCATGGCACAAGAGAAGAGGAAC 1239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1116 GTGGATTCATCACTGTGCTCACAGGAACAATGATACTCCATGGCACAAGAGAAGAGGAAC 1175
Query 1240 AACAACAAGCTTCTTCAGAACATGTAAGATGGTACGACTCGAGAAAGAGCATGAACGAAG 1299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1176 AACAACAAGCTTCTTCAGAACAAGTAAGATGGTACGACTCGAGAAAGAGCATGAACGAAG 1235
Query 1300 AACATTTGGTAAGCCTGTACAGTCCTGAATACTAGGAAGAAGAAGATGCAATATCTCTAG 1359
||||| || |||| ||||||||||||||||||||||| || | || | | ||||||
Sbjct 1236 AACATCTGATAAGTTTGTACAGTCCTGAATACTAGGAA-AA-AC-AT-C--T--CTCTAG 1287
Query 1360 GCTC-TCAATAGATTGAATGAA-ATTTGCCAAAAACAAGCCTCATG-AGTCTTAAAACTG 1416
||| | ||||||||||||||| ||||||||| ||||||||||| | | |||||||||||
Sbjct 1288 ACTCCT-AATAGATTGAATGAATATTTGCCAAGAACAAGCCTCAGGGA-TCTTAAAACTG 1345
Query 1417 GATCAATCAACAAATCTGCGGTCGGGTTCATTTTTGTATTGTTTTATGGTCACTGTACAG 1476
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1346 GATCAATCAACAAATCTGCGGTCGGGTTCGTTTTTGTATTGTTTG-TGGTCTCTGTACAG 1404
Query 1477 ACAAAAAAGTTTGTCTAGTTaaaaaaaCTTCACATTCTTTAGTTTTGATCTTTGTGTCTC 1536
|||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1405 ACAAAAAAGTTTGTCTAGTTAAAAAA-CTTGACATTCTTTAGTTTTGATCT--GTGTCTC 1461
Query 1537 TCTTCTTAGTACAGT-ACAGGTCTTCTTCTTATCTGGACTCTTTTGTCCAAATTTACACT 1595
| | ||||||||||| |||||| |||||||||||||||| ||| |||||||||||| |
Sbjct 1462 T-T-CTTAGTACAGTTACAGGTGGTCTTCTTATCTGGACT-TTT-GTCCAAATTTAC--T 1515
Query 1596 GTTATATATTTATATATGTATCTACATTTTTCTAGGATGAAATATTCCTTCATTGTATCT 1655
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 1516 GTTATATATTTATATATGTATCTTCATTCTTCTAGGATGAAATATTCCTTAATTGTATCT 1575
Query 1656 CACTTGAATGAAATAA-TAAGGTAAAAGTTTGAT 1688
|| |||||||||| || |||| ||||||||||||
Sbjct 1576 CAATTGAATGAAAAAAATAAGTTAAAAGTTTGAT 1609
Score = 217 bits (117), Expect = 3e-55
Identities = 250/305 (82%), Gaps = 46/305 (15%)
Strand=Plus/Plus
Query 16 gagagCTCGTCGAACCAGAtctctttctctttct-tc-tctctaattttgatttttttga 73
|||||||||| ||||||||||||| ||||| ||| || ||||| ||||||| |||||||
Sbjct 1 GAGAGCTCGTGGAACCAGATCTCTCTCTCTCTCTCTCTTCTCTCATTTTGA--TTTTTGA 58
Query 74 attttcttctGCAAAGCAAAATCGCAGAAGTCGTCGTGTGTCCGCGTTGCATCGAACCAC 133
| | || | | ||| |||||||||||||||| | | ||||||||||||| |||||
Sbjct 59 A---T-TT-T-C--AGC--AATCGCAGAAGTCGTC--G-G-CCGCGTTGCATCGGACCAC 104
Query 134 TTGTTCGATTCTCTTTCGTCATCCTCTCTTATATCATCAGCAACAACAACCCTTGTTTCA 193
|||| |||||||||||||||| | | ||| ||| |||||||||||||||||
Sbjct 105 TTGTCCGATTCTCTTTCGTCA----C-C----ATC--CAG---CAACAACCCTTGTTTCA 150
Query 194 AATTTCTTCATTTCCGCCGGATTTATAATCGCAGATTGATTCTGATCG-A----T----- 243
||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 151 AATTTCTTCATTTCCGCCGGATTTATAATAGCAGATTGATTCTGATCGGAGACATCCCCG 210
Query 244 AGAGATAGGGTTATTCAA--GGAGAGACCTCGATTGACTTCAATTGTCTTCCTGATTCGA 301
|||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 211 AGAGATAGGGTTAT-CAAAAGGAGAGACCGAGATTGACTTCAATTGTCTTCC-GATTCGA 268
Query 302 TAGAT 306
|||||
Sbjct 269 TAGAT 273
> Ahg490637 jgi|Araly1|490637|fgenesh2_kg.7__70__AT4G38730.1
Length=1140
Score = 883 bits (478), Expect = 0.0
Identities = 837/1007 (83%), Gaps = 38/1007 (4%)
Strand=Plus/Plus
Query 348 ATGGAGACGGACAATGGGAAGGGGT-TGATACTAGCTGTAG-CGTCAAGTGTTTTCATTG 405
|||| | ||||||||| | | |||| || ||||||| | |||| ||||| ||||| |
Sbjct 23 ATGGTGTCGGACAATGAG-ATGGGTCTGGCGTTAGCTGT-GTCGTCGAGTGTCTTCATAG 80
Query 406 GTTCCAGCTTCATTCTT-AAGAAGAAAGGTCTTAAGCGAGCTGGTGCTATTGGCACCCGA 464
|||||||||||||| || |||||||||||||| ||||| |||| ||||| |||||||||
Sbjct 81 GTTCCAGCTTCATT-TTGAAGAAGAAAGGTCTCAAGCGTGCTGCTGCTAATGGCACCCGC 139
Query 465 GCAGGATAT-GGAGGCTATACTTATTTATTAGAGCCGCTTTGGTGGGCAGGGATGGTTAC 523
|| || | | ||||| ||||| ||||| |||||||| |||||||||| ||| |||| ||
Sbjct 140 GCTGGGT-TCGGAGGTTATACATATTTGTTAGAGCCACTTTGGTGGGTAGGCTTGGTAAC 198
Query 524 TATGA-TTGTTGGAGAAGCTGCAAACTTTGTGGCTTACATTTATGCACCAGCTGTACTCG 582
|||| || |||||||| ||| ||||||||||||||| ||||||| || |||||||| |
Sbjct 199 AATGACTT-TTGGAGAAATTGCTAACTTTGTGGCTTACGTTTATGCGCCGGCTGTACTAG 257
Query 583 TTACTCCTCTCGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTATT-G 641
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 258 TCACTCCTCTTGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTGTTAG 317
Query 642 AAGGAAAAACTTAAGAAAATGGGGGTTCTCGG-ATGTGTGTCTTGCATTGTTGGG-TCTG 699
| | ||||||||| ||||||||| ||| | || |||||| | ||||||||| ||| || |
Sbjct 318 ACG-AAAAACTTAGGAAAATGGGAGTT-TGGGGATGTGTTTGTTGCATTGT-GGGCTCAG 374
Query 700 TTGTTATTGTTATACACGCACCTAAGGAACAGACTCCTAATTCCGTTGAGGAAATATGGA 759
|| | || || |||||||||||| |||| |||||||| ||||| ||||| ||||| ||||
Sbjct 375 TTATGATCGTCATACACGCACCTCAGGAGCAGACTCCCAATTCTGTTGAAGAAATCTGGA 434
Query 760 ATCTGGCTACT-CAGCCAGCTTTTCTAATCTACGTAGCCATAACCATGTCGATTGTCCTT 818
| || || | | ||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 435 AACTAGCAA-TGCAGCCAGCTTTTCTAATTTACGTAGCCATATCAATGTCGATTGTCCTG 493
Query 819 GCTTTAATTCTGCATTTTGAACCCCTGTGCGGCCAAACAAACATTCTGGTTTATATTGGA 878
||||| |||||| | | |||||| || ||||||||||| |||||||| |||||||| |||
Sbjct 494 GCTTTGATTCTGTACTGTGAACCTCTCTGCGGCCAAACCAACATTCTTGTTTATATCGGA 553
Query 879 ATCTGTTCGTTAATGGGTGCTCTCACTGTTATGAGCATAAAAGCTATTGGAATTGCGATA 938
|| ||||| || |||||| |||| || |||||||||||||| ||| | || |||||||||
Sbjct 554 ATTTGTTCATTGATGGGTTCTCTTACAGTTATGAGCATAAAGGCTGTAGGGATTGCGATA 613
Query 939 AAATTAACAATGGA-GGGAGTAAGCCAGATCGGGTATCCACAGACATGGCTTTTTGTCAT 997
|| |||||| | || |||| ||| |||||| |||||||| |||| ||| |||||| |||
Sbjct 614 AAGTTAACATTTGAAGGGA-TAAACCAGATTTGGTATCCAGAGACTTGGTTTTTTGCCAT 672
Query 998 GGTTGCAGTAACT-TGTGTCGTTACACAATTGATTTACCTAAATAAGGCTTTGGACACAT 1056
|||||||| || | ||||| |||| ||| ||||||||||||| ||||| ||||||| |
Sbjct 673 GGTTGCAGCAA-TATGTGTGGTTATGCAAATGATTTACCTAAACAAGGCGCTGGACACTT 731
Query 1057 TCAACGCAGCCATTGTTTCTCCAGTATACTATGTAATGTTCACAACCCTCACAATTGTTG 1116
|||||||||| |||||||||||| | || ||||| ||||||||||| |||||||||||||
Sbjct 732 TCAACGCAGCAATTGTTTCTCCAATTTATTATGTGATGTTCACAACACTCACAATTGTTG 791
Query 1117 CTAGTGCAATAATGTTCAAGGACTGGTCTGGGCAAGACGCAGCCAGCGTAGCCTCTGAG- 1175
|||||||||| ||||||||||||||| ||||||| || ||| |||| |||||||||||
Sbjct 792 CTAGTGCAATCATGTTCAAGGACTGGAATGGGCAAAACACAGACAGCATAGCCTCTGAGA 851
Query 1176 TTATGTGGATTCATCACTGTGCTCACAGGGACAATGATACTCCATG-GCACAAGAGAAGA 1234
|| |||||||||||||| ||||| ||||| ||| | |||||||||| | |||||||||||
Sbjct 852 TT-TGTGGATTCATCACAGTGCTTACAGGAACAGTTATACTCCATGCG-ACAAGAGAAGA 909
Query 1235 GGAACAA-CAACAAGCTTCTTCAGAACATGTAAGATGGTACGACTC-GAGAAAGAGCAT- 1291
||||||| | | || || |||| || | ||||| | || || | ||| |||| |
Sbjct 910 GGAACAAGCTTC--GCCTCGA-AGAA--TG-A-GATGGCAAGATTCAGGGAA-GAGCTTT 961
Query 1292 GAACGAAGAACATTTGGTAAGCCTGTACAGTCCTGAATACTAGGAAG 1338
|| ||||||||||||| ||| |||||||||||||||| |||||||
Sbjct 962 GA-CGAAGAACATTTGACAAGTTTGTACAGTCCTGAATATTAGGAAG 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63344077435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5