BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21130.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480962 jgi|Araly1|480962|fgenesh2_kg.4__22__AT2G21130.1 976 0.0
> Ahg480962 jgi|Araly1|480962|fgenesh2_kg.4__22__AT2G21130.1
Length=773
Score = 976 bits (528), Expect = 0.0
Identities = 706/784 (90%), Gaps = 43/784 (5%)
Strand=Plus/Plus
Query 1 AAATATCTTCTCTTCGTCCTCAACAGCTTCTCCAGAAAATCTAGGTCACACAC---TTTT 57
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AAATATCTCCTCTTCGTCCTCAACAGCTTCTCCAGAAAATCTAGGTCACACACTTTTTTT 60
Query 58 AAAATCCTCGTTCCCAAAATCGAACAACAACAATGGCGTCGCATCCTAAAGTTTTCTTCG 117
| ||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 61 TTATTCCTC-CTCCCAAAATCG---AACAACAATGGCGACGCATCCCAAAGTTTTCTTCG 116
Query 118 ACATGACCATCGGCGGTGCACCAGCGGGGAAGATCGTGATGGAGCTTTACACCGACAAGA 177
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 117 ACATGACCATCGGCGGTGCACCGGCGGGGAAGATCGTGATGGAGCTTTACACCGACAAGA 176
Query 178 CACCAAAGACGGCGGAGAATTTCAGAGCTCTATGCACCGGAGAGAAAGGCGTCGGACGTA 237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 177 CACCAAAGACGGCGGAGAATTTCAGAGCTCTATGCACCGGAGAGAAAGGCGTTGGACGTA 236
Query 238 GCGGAAAGCCACTTCACTTCAAAGGATCTTCGTTTCACCGCGTGATCCCAAATTTCATGT 297
|||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 237 GCGGGAAGCCACTTCACTTCAAAGGATCTGCGTTTCACCGTGTGATCCCTAATTTCATGT 296
Query 298 GCCAAGGAGGAGATTTCACCAAAGGTAACGGAACTGGTGGCGAATCGATCTACGGAGCCA 357
| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||
Sbjct 297 GTCAAGGAGGAGATTTCACCAATGGAAACGGAACTGGTGGTGAATCGATCTACGGATCCA 356
Query 358 AATTTGAGGATGAGAATTTCGAGAGGAAGCACACAGGACCTGGGATTTTGTCGATGGCTA 417
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGTTTGAGGATGAGAATTTCGAGAGGAAGCACACAGGACCTGGGATTTTGTCGATGGCTA 416
Query 418 ACGCTGGTGCTAACACTAATGGATCTCAGTTTTTCATCTGTACGGTGAAGACTGATTGGC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACGCTGGTGCTAACACTAATGGATCTCAGTTTTTCATCTGTACGGTGAAGACTGATTGGC 476
Query 478 TTGATGGTAAGCATGTGGTGTTTGGTCAGGTGGTTGAAGGCTTGGACGTTGTTAAGGCTA 537
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 477 TCGATGGTAAGCATGTGGTGTTTGGTCAGGTGATTGAAGGCTTGGACGTTGTTAAAGCTA 536
Query 538 TTGAGAAGA-TCGGATCTTCTTCTGGAAAGCCGACGAAGCCTGTTGTGATCGCTGATTGT 596
||||||||| | |||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct 537 TTGAGAAGAGT-GGATCTTCGTCTGGTAAGCCGACGAAGCCTGTTGTCATTGCTGATTGT 595
Query 597 GGTGAGATCTCTTCTTAGATTCCGGTTGTGGTGGTGACGGTTTCAATTTCTATGTTTCTA 656
||||||||||| |||||||||||||| || | | | | || ||||||
Sbjct 596 GGTGAGATCTCCTCTTAGATTCCGGT-GTT-TC-T-A-G-----AA-------GTTTCT- 637
Query 657 GAAGTTTCTTCTTAGCTAATTATGGACT----GTGATCTTTGCTCTGTTTCTGCTTTTGC 712
| ||| ||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 638 ----T--CTT---AGCTA-TTATGGACTCTCTGTGATGTTTGCTCTGTTTCTGCTTTTGG 687
Query 713 GTATTTTCCTAATTAAGCACCATTAATAATAAGAAAGTTTTAAGGAATTGTGGCGTTTTT 772
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 688 GTATTTTCCTAATTAAGCACCATTAATAATAAGTT--TTTTAAGGAATTGTGGCATTTTT 745
Query 773 GTAA 776
|||
Sbjct 746 TTAA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5