BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21130.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg480962 jgi|Araly1|480962|fgenesh2_kg.4__22__AT2G21130.1 976 0.0 > Ahg480962 jgi|Araly1|480962|fgenesh2_kg.4__22__AT2G21130.1 Length=773 Score = 976 bits (528), Expect = 0.0 Identities = 706/784 (90%), Gaps = 43/784 (5%) Strand=Plus/Plus Query 1 AAATATCTTCTCTTCGTCCTCAACAGCTTCTCCAGAAAATCTAGGTCACACAC---TTTT 57 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 AAATATCTCCTCTTCGTCCTCAACAGCTTCTCCAGAAAATCTAGGTCACACACTTTTTTT 60 Query 58 AAAATCCTCGTTCCCAAAATCGAACAACAACAATGGCGTCGCATCCTAAAGTTTTCTTCG 117 | ||||| ||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 61 TTATTCCTC-CTCCCAAAATCG---AACAACAATGGCGACGCATCCCAAAGTTTTCTTCG 116 Query 118 ACATGACCATCGGCGGTGCACCAGCGGGGAAGATCGTGATGGAGCTTTACACCGACAAGA 177 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 117 ACATGACCATCGGCGGTGCACCGGCGGGGAAGATCGTGATGGAGCTTTACACCGACAAGA 176 Query 178 CACCAAAGACGGCGGAGAATTTCAGAGCTCTATGCACCGGAGAGAAAGGCGTCGGACGTA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 177 CACCAAAGACGGCGGAGAATTTCAGAGCTCTATGCACCGGAGAGAAAGGCGTTGGACGTA 236 Query 238 GCGGAAAGCCACTTCACTTCAAAGGATCTTCGTTTCACCGCGTGATCCCAAATTTCATGT 297 |||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||| Sbjct 237 GCGGGAAGCCACTTCACTTCAAAGGATCTGCGTTTCACCGTGTGATCCCTAATTTCATGT 296 Query 298 GCCAAGGAGGAGATTTCACCAAAGGTAACGGAACTGGTGGCGAATCGATCTACGGAGCCA 357 | |||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||| Sbjct 297 GTCAAGGAGGAGATTTCACCAATGGAAACGGAACTGGTGGTGAATCGATCTACGGATCCA 356 Query 358 AATTTGAGGATGAGAATTTCGAGAGGAAGCACACAGGACCTGGGATTTTGTCGATGGCTA 417 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 AGTTTGAGGATGAGAATTTCGAGAGGAAGCACACAGGACCTGGGATTTTGTCGATGGCTA 416 Query 418 ACGCTGGTGCTAACACTAATGGATCTCAGTTTTTCATCTGTACGGTGAAGACTGATTGGC 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 ACGCTGGTGCTAACACTAATGGATCTCAGTTTTTCATCTGTACGGTGAAGACTGATTGGC 476 Query 478 TTGATGGTAAGCATGTGGTGTTTGGTCAGGTGGTTGAAGGCTTGGACGTTGTTAAGGCTA 537 | |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 477 TCGATGGTAAGCATGTGGTGTTTGGTCAGGTGATTGAAGGCTTGGACGTTGTTAAAGCTA 536 Query 538 TTGAGAAGA-TCGGATCTTCTTCTGGAAAGCCGACGAAGCCTGTTGTGATCGCTGATTGT 596 ||||||||| | |||||||| ||||| |||||||||||||||||||| || ||||||||| Sbjct 537 TTGAGAAGAGT-GGATCTTCGTCTGGTAAGCCGACGAAGCCTGTTGTCATTGCTGATTGT 595 Query 597 GGTGAGATCTCTTCTTAGATTCCGGTTGTGGTGGTGACGGTTTCAATTTCTATGTTTCTA 656 ||||||||||| |||||||||||||| || | | | | || |||||| Sbjct 596 GGTGAGATCTCCTCTTAGATTCCGGT-GTT-TC-T-A-G-----AA-------GTTTCT- 637 Query 657 GAAGTTTCTTCTTAGCTAATTATGGACT----GTGATCTTTGCTCTGTTTCTGCTTTTGC 712 | ||| ||||| ||||||||| ||||| ||||||||||||||||||||| Sbjct 638 ----T--CTT---AGCTA-TTATGGACTCTCTGTGATGTTTGCTCTGTTTCTGCTTTTGG 687 Query 713 GTATTTTCCTAATTAAGCACCATTAATAATAAGAAAGTTTTAAGGAATTGTGGCGTTTTT 772 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 688 GTATTTTCCTAATTAAGCACCATTAATAATAAGTT--TTTTAAGGAATTGTGGCATTTTT 745 Query 773 GTAA 776 ||| Sbjct 746 TTAA 749 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5