BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21150.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480964 jgi|Araly1|480964|fgenesh2_kg.4__24__AT2G21150.1 1938 0.0
> Ahg480964 jgi|Araly1|480964|fgenesh2_kg.4__24__AT2G21150.1
Length=1194
Score = 1938 bits (1049), Expect = 0.0
Identities = 1149/1196 (96%), Gaps = 11/1196 (1%)
Strand=Plus/Plus
Query 1 GAAGAATCTAGTGAATTTCCGATTCCGATTTTGAGCTAAAGGAAG-C-GAGAGAAGAAAA 58
||||||||| ||||| |||||||||||||||||||| |||||||| | |||| |||||||
Sbjct 1 GAAGAATCTTGTGAAATTCCGATTCCGATTTTGAGCGAAAGGAAGCCGGAGA-AAGAAAA 59
Query 59 GATGTCGGGTATGGGTGACGGCTACGTTGGTACGGCTCAAGATGCGGTGAGGATACGGCG 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TATGTCGGGTATGGGTGACGGCTACGTTGGTACGGCTCAAGATGCGGTGAGGATACGGCG 119
Query 119 GCTTCAGAAGCAAAGAGAGGCCGAACGCaaaaaaaTACAAGAGCTCAAGAGCAAGTCTGC 178
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 120 GCTTCAGAAGCAAAGAGAGGCCGAGCGCAAAAAAATCCAAGACCTCAAGAGCAAGTCTGC 179
Query 179 CTCCGGCAATGACCAATCTGGTCTTCTCCAATTCGGCACCAGCTCGTGCGAGATTCTTGA 238
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TTCCGGCAAAGACCAATCTGGTCTTCTCCAATTCGGCACCAGCTCTTGCGAGATTCTTGA 239
Query 239 CACTGCTTTCAAGAAGGAAACAGTGGGTTTAGTTACAAGAGAGGAGTATGTGGAGAAGAG 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CACTGCTTTCAAGAAGGAAACAGTGGGTTTAGTTACAAGAGAGGAGTATGTTGAGAAGAG 299
Query 299 GGTTAATATTCGTAATAAGTTCGAGGAAGAAGAGAAGGAGAAACTGCAGAAGCTACAGCA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTTAATATTCGTAATAAGTTCGAGGAAGAAGAGAAGGAGAAACTGCAGAAGCTACAGCA 359
Query 359 AGAGGAAGAGGAGTTGCAGCTAGAGAAGCGTAACAAGAAGAGAAAGATTAAGGGATCTTC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGGAAGAGGAGTTGCAGCTAGAGAAGCGTAACAAGAAGAGAAAGATTAAGGGATCTTC 419
Query 419 CCGCTTATCTTTTGCTGAAGATTTTGAGAATGGCAGTGATGAAGATGATGGAGAAAACAA 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CCGCTTATCTTTTGCTGAAGATTTTGAGAATGGCAGTGGTGAAGATGATGGAGAAAACAA 479
Query 479 GAGTTCTGGGACAGGGAACTTACGCTGCGGAAAACTTGGCAAGGACCCCTCAGTGGAAAC 538
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGTTCTGGGACAGTGAACTTACGCTGCGGAAAACTTGGCAAGGACCCCTCAGTGGAAAC 539
Query 539 GAATTTCCTGCCTGACAGTGAGAGGGAGGCGGAGGAACAAGCTGAACGTGAAAGGCTGAA 598
||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 540 TAATTTCCTGCCTGACAGTGAGCGGGAGGCTGAAGAACAAGCTGAACGTGAAAGGCTGAA 599
Query 599 GAAGCAGTGGCTTCGTGAACAAGAGCAGATTAAAAACGAGCCTCTTGAGATTACTTACAG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAGCAGTGGCTTCGTGAACAAGAGCAGATTAAAAACGAGCCTCTTGAGATTACTTACAG 659
Query 659 TTACTGGGATGGGACTGGCCATAGACGAGTTATTCAGGTCCGCAAGGGTGACCCAATTGG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTACTGGGATGGGACTGGCCATAGACGAGTTATTCAGGTCCGCAAGGGTGACCCAATTGG 719
Query 719 GAATTTTCTGCGGGCTGTTCAGCAGCAGCTTGCCCCTGACTTCCGGGAGATTCGGACGGC 778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAATTTTCTACGGGCTGTTCAGCAGCAGCTTGCCCCTGACTTCCGGGAGATTCGGACGGC 779
Query 779 ATCAGTGGAGAATTTACTATATGTAAAGGAAGATCTTATTATTCCACATCAACACAGTTT 838
||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 ATCAGTGGAGAATCTGTTATATGTAAAGGAAGATCTTATTATCCCACATCAACACAGTTT 839
Query 839 CTATGAGCTGATCATTAACAAAGCGAGGGGGAAGAGTGGGCCGCTGTTTCACTTTGATGT 898
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 840 CTATGAGCTGATCATTAACAAAGCTAGAGGGAAGAGTGGCCCGCTGTTTCACTTTGATGT 899
Query 899 GCATGAAGACGTGAGAACAATAGCAGATGCAACGATAGAGAAAGACGAGTCGCATGCGGG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCATGAAGACGTGAGAACAATAGCAGATGCAACGATAGAGAAAGACGAGTCGCATGCGGG 959
Query 959 TAAAGTTGTGGAGAGGCATTGGTACGAGAAGAACAAGCATATATTCCCTGCTTCCAGATG 1018
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TAAAGTAGTGGAGAGGCATTGGTACGAGAAGAACAAGCATATATTCCCTGCTTCCAGATG 1019
Query 1019 GGAGATTTACGACCCGACAAAGAAATGGGAACGGTACACAGTCCATGGGGATTAAT-TCT 1077
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
Sbjct 1020 GGAGATTTACGACCCGACAAAGAAATGGGAACGGTACACAGTCCATGGAGATTGATGT-T 1078
Query 1078 GGACCAGAACATGCTTTTGATGGATCG-TTTGTTGACATGATTGATCAGATTTGGTGTAA 1136
||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1079 GGAGCAGAAGATGCTTTTGATGGATCGCTTTGTTGACATGATGGATCAGATTTGGTGTAA 1138
Query 1137 TAGTAGTGGAATGTTCATGGCATT--TTT---AATGCTCATTCTTCTTCCCTCAAT 1187
|||||||||||||||||||||||| ||| ||| | ||||||||||||| |||
Sbjct 1139 TAGTAGTGGAATGTTCATGGCATTCATTTTTTAATATTTATTCTTCTTCCCTTAAT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5