BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21160.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480966 jgi|Araly1|480966|fgenesh2_kg.4__26__AT2G21160.1 1714 0.0
> Ahg480966 jgi|Araly1|480966|fgenesh2_kg.4__26__AT2G21160.1
Length=1081
Score = 1714 bits (928), Expect = 0.0
Identities = 1036/1085 (95%), Gaps = 19/1085 (2%)
Strand=Plus/Plus
Query 25 AAAGAGCAAAAGCATAAATAGCATC----GAGAGAGACACTG-T-TCTCATTCATTCGCA 78
||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1 AAAGAGCAAAAGCATAAATAGCATCGAGAGAGAGAGACACTGTTCTCTCATTCATTCGCA 60
Query 79 AATTCGTTGACC---A-TATTTGATAGAATCAAGCGATGATGAATCTTAGGGTTTTGTTC 134
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AATTCGTTGACCATTAGTATTTGATAGAAGCAAGCGATGATGAATCTTAGGGTTTTGTTC 120
Query 135 CTCGCTCTCCTTCTCCTTGCATCTCCTCTGCTTCAAGTTGCTAGATGTCAATCGGATGCC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGCTCTCCTTCTCCTTGCATCTCCTCTGCTTCAAGTTGCTAGATGTCAATCGGATGCC 180
Query 195 GAGGATCATTCAAGTCTTGTTGACGATGTTGTGGGAGAAAACACTGATGATGCGGTTGAG 254
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 181 GAGGATCATTCCAGTCTTGTTGATGATGTTGTGGGAGAAAACAGTGATGATGCCGTTGAG 240
Query 255 GAAGATGACCATGATTTGGATATGAACTTGTCCTCATTTCCAGGAGTTGAGACTGTTTGT 314
||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 241 GAAGATGACCACGATTTGGATATCAACTTGTCATCATTCCCAGGAGTTGAGACTGTTTGT 300
Query 315 GTTTTCCCCAAAAACAGTGCCAAATTGGTTCCAGCTGGAGAAGAGACTGAGCTCCTTGTT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTTTCCCCAAAAACAGTGCCAAATTGGTTCCAGCTGGAGAAGAGACTGAGCTCCTTGTT 360
Query 375 GGTCTTAAAAATGAAGGGAAAACTAGAGTAGGTGTGATGGGAATTAGGGCCAGCGTTCAT 434
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GGTCTTAAAAATGAGGGGAAAACTAGCGTAGGTGTGATGGGAATTAGGGCCAGCGTTCAT 420
Query 435 CTTCCTTATGATCATAAGTTGTTGGTTCAGAATCTAACCATGTTGAGACTT-AACAATGC 493
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 421 CTTCCTTATGATCATAAGTTGTTGGTTCAGAATCTAACCATGTTGAGA-TTCAACAATGC 479
Query 494 ATCCATCCCAACGTCTCTTCAAGCAACATTCCCATACATCTTTGCAGTCAGCCAGTACTT 553
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 480 ATCCATCCCAACTTCTCTTCAAGCAACATTCCCGTACATCTTTGCAGTCAGCCAGTACCT 539
Query 554 GCAGCCTGGAGCATTTGATCTGGTGGGTTATATCATATACGATGTGGAAGGAAAGCCATA 613
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 540 GCAGCCTGGAGCATTTGATCTGGTGGGTTATATCATCTACGACGTGGAAGGAAAGCCATA 599
Query 614 CCAGAGTGTCTTCTACAATGGAACCATAGAGGTAGTTGAATCTGGAGGTCTTCTCAGCGG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCAGAGTGTCTTCTACAATGGAACCATAGAGGTAGTTGAATCTGGAGGTCTTCTCAGCGG 659
Query 674 CGAATCTGTTTTCCTTTTAACACTCGGAATCGGTCTCCTCCTCCTCCTCGGTCTATGGGC 733
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGAATCTGTCTTCCTTATAACACTCGGAATCGGTCTCCTCCTCCTCCTCGGTCTATGGGC 719
Query 734 ATACAGCCAAGTTCAGCGTCTCACCAAGAAAACCAAAAAGGTTTCCAAGGTGGAAGTAGG 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATACAGCCAAGTTCAGCGTCTCACCAAGAAAACCAAAAAGGTTTCCAAGGTGGAAGTAGG 779
Query 794 AACTAGGTCTACCGAGGCATCACTCGATGAATGGCTCGAGGGAACTACTTTGGCCAAGAC 853
||| |||||||| || |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 780 AACCAGGTCTACAGATGCATCACTCGATGAATGGCTCGAGGGGACTACTTTGTCCAAGAC 839
Query 854 ATCGTCTGGGAAAACAAAGAACAAGAAGAACTAAAGTAGAGCTGTTTTGCTCCTTCCAGT 913
|| |||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 840 ATTGTCTGGGAAATCGAAGAACAAGAAGAACTAAA--AGAGATGTTTTGCTCCTTCCAGT 897
Query 914 TGTTATAGACTCAGCTTCGGCGTTTTGAAAGAGTTTCCAAGTTTAAAGTTCAGTCTTGAG 973
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 898 TGTTATAGACTCAGCTTCGGCGTTTTGAAAGAGTTTCCAAGTTTAA-GTTCAGTCTTGAG 956
Query 974 GAAATTTAGGGTTTTAAACGACACttttttt---G-TTCCAGCATTGTACTCTTTAGACA 1029
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 957 GAAATTTAGGGTTTTAAACGTCACTTTTTTTTTTGGTTCCAGCATTGTACTCTTTAGACA 1016
Query 1030 ATCTTTACTTCTTGTCATAAATATTCTCCTCATGAAACAAGTTAACTTATAAATGGTTTA 1089
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1017 ATCTTTACTTCTTGTCATAAATATTCTCCTCATGAAACCACTTAACTTATAAATGGTTTA 1076
Query 1090 GATCT 1094
|||||
Sbjct 1077 GATCT 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5