BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21180.1

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932040 jgi|Araly1|932040|scaffold_400028.1                        623    6e-178


> Ahg932040 jgi|Araly1|932040|scaffold_400028.1
Length=435

 Score =  623 bits (337),  Expect = 6e-178
 Identities = 393/419 (94%), Gaps = 7/419 (2%)
 Strand=Plus/Plus

Query  26   AACTATGGCTTATGAAGAGAGAAGATCATCGATCCTGGATTCATTCTCGCTATCGCCACT  85
            ||||||||| ||||  ||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct  17   AACTATGGCATATG--GAGAG-AGATCATCGATCTTGGATTCATTCTCGCTCTCGCCACT  73

Query  86   ACCATACCCAGTTCTTTTGATCCTAGCCGTTGCTTCAGTGTTCTTGTTGAGTTCATGGTA  145
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  74   ACCATACCCAGTTCTCTTGATCCTAGCCGTTGCTTCAGTGTTCTTGTTGAGTTCATGGTA  133

Query  146  CTTCAGCTTGGAAGAAGCAGCCGAATCAGCGGAAGAGCAGATAAATTTTGCGCTTCTCTT  205
            ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct  134  CTTCAGCTTGGAAGATGCAGCCGAATCAGCGGGAGAGCAGATAAATTTTGCTCTTCTCTT  193

Query  206  GATTCCTCTGTTTCTTATAGTCTTGGTCCGGTGGTTATCTTCCATGGAGAACCCTGATGC  265
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  194  GATTCCTCTGTTTCTTATAGTGTTGGTCCGGTGGTTATCTTCCATGGAGAACCCTGACGC  253

Query  266  GC-TTCTCGGGATGTTTTC-AAGCAGTCGTCGGACAACTTACGTGAGTCCCGGAGCCGGA  323
             | |||||||||||||||| || | | |||||||| ||||||||||||||||||||||||
Sbjct  254  -CATTCTCGGGATGTTTTCGAACC-GACGTCGGACGACTTACGTGAGTCCCGGAGCCGGA  311

Query  324  GGTGACGGTGGAAGCTCGCCGTGGGGAGTGGCGGCGTTGATAGTTTTGTTGCTTGTATTG  383
            | |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct  312  GATGACGGTGGAAGCTCGCCGTGGGGGGTGGCGGCTTTAATAGTTTTGTTGCTTGTATTG  371

Query  384  CTTCAGTATCAATCAAGTTTCTTGGAGATGTGGTCTGGTTAATGATATTGATAGGtttt  442
            ||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  372  CTTCATTATCAATCAAGTTTCTTGGAGATGTGGTTTGGTTAATGATATTGACAGGTTTT  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26533550232


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5