BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21185.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480969 jgi|Araly1|480969|fgenesh2_kg.4__29__AT2G21185.1 752 0.0
> Ahg480969 jgi|Araly1|480969|fgenesh2_kg.4__29__AT2G21185.1
Length=589
Score = 752 bits (407), Expect = 0.0
Identities = 550/614 (90%), Gaps = 29/614 (5%)
Strand=Plus/Plus
Query 3 TATCATCATCGACCATAATAATATCA-TT-TATAGT-GTACCTAACAAACCATTATCTCT 59
|||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1 TATCATCATCAACCATAATAATATCATTTATATAGTAATACCTAACAAACCATTATCTCT 60
Query 60 CG-CTTTATCTTTCTTTGTTTCACTATCTTCCGAGGAATAAAAAGCTAGCATTTGACAAA 118
| |||||||||||||||||| | |||||||| | |||||| | ||
Sbjct 61 -GTCTTTATCTTTCTTTGTTTTATTATCTTCC------T----AGCTAG----T----AA 101
Query 119 TCAATAAGTAAACCATTAAACAAACCAAAGAAAACAGTGAGAGGGCGATGCATTACCACG 178
| || ||| ||||| ||| ||| || | | || | || |||||||||||||||||
Sbjct 102 T-AAAAAGCAAACC---AAAGAAAACAGTG-AGGGAGGGCGA-GGCGATGCATTACCACG 155
Query 179 GCTGCTGCTGCGGACGGTGTAGAGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCA 238
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 156 GCTGCTGCTGCGGACGGTGTAGGGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCA 215
Query 239 CGGTGGCCCTCGTCCTCTTAGCCCTTTCCTCCGTCGTTAAATTCGAAGTTGCTGTCTCCT 298
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 216 CGGTGGCCCTCGTCCTCTTAGCCCTTTCCTCCGCCGTGAAATTCGAAGTTGCTGTCTCCT 275
Query 299 CAGGCGAAGATGTGCTGAGTTGGCTCCTCCTAGCCGCGGTTCCATTGGCTCTGCTCTTCG 358
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 276 CAGGCGAAGATGTGCTGAGCTGGCTTCTCCTCGCCGCGGTTCCATTGGCTCTGCTCTTCG 335
Query 359 CCGTGAGATGTCTCTCTTGTCTTGAAACGTCAAAGCGATCTACTTACTACTGTCCCTGCG 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 336 CCGTGAGATGTCTCTCTTGTCTTGAAACGTCCAAGCGATCTACTTACTACTGTCCTTGTG 395
Query 419 GTCGCTGGAGATGCGTTTGCTACTACTAGTTCTGATCTCGTGGTTAGTGTTGTTGGGTTT 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 396 GTCGCTGGAGATGCGTTTGCTACTACTAGTTCTGATCTCGCGGTTAGTGTTGTTGCGTTT 455
Query 479 GCGTTTATGTAAATAAATGATTTCGTATATTTTTAGGTATTCTTGATGTTTACGTGAAGC 538
|||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||| |
Sbjct 456 GCGTTTGTGTAAATAAATGATTTCGTAAAATTTTGGGTATTCTTGATGTTTACGTGAAAC 515
Query 539 AAATATGTGTGACGTGAAGCACCGATTTAGGTGGATTTGACGAACGTGATTGGTTACAAT 598
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 516 AAATATGTGTGACGTGAAGCACCGATTTTGGTGGATTTGACGAACGTGATTGATTACAAT 575
Query 599 ATTCAATTTTAACC 612
|||||| | |||||
Sbjct 576 ATTCAAATCTAACC 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5