BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21190.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932042 jgi|Araly1|932042|scaffold_400030.1 1426 0.0
Ahg490643 jgi|Araly1|490643|fgenesh2_kg.7__76__AT4G38790.1 883 0.0
> Ahg932042 jgi|Araly1|932042|scaffold_400030.1
Length=853
Score = 1426 bits (772), Expect = 0.0
Identities = 827/854 (97%), Gaps = 2/854 (0%)
Strand=Plus/Plus
Query 28 agaagaagaagaaggaatcgaaaaatgaagaCTCCGATCCACGCGGTTTCGACATGGGTG 87
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAAGAAGAAGGAATCG-AAAATGAAGACTCCGATCCACGCGGTTTCGACATGGGTG 59
Query 88 AGGAGGCAGCCTCCAAAGGTGAAAGCTTTCCTTGCCGTCGTATCTGGCATGGCGGCTCTT 147
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 60 AGAAGGCAGCCACCAAAGGTGAAAGCTTTCCTTGCCGTCGTATCTGGTATGGCGGCGCTT 119
Query 148 GTTCTCCTCAAACTCATCGTTCACGATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTT 207
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTCTTCTCAGATTCATCGTTCACGATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTT 179
Query 208 CATTCTATTGGAATCTCTGTTCTTATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGA 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATTCTATTGGAATCTCTGTTCTTATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGA 239
Query 268 TTGTCATTGAAATCTCAGGAGCTTACGGCGATATTTCTAGCTGTGAGGCTTTATTGCAGT 327
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 TTGTCATTGAAATCTCAGGAGCTTACGGCAATATTTCTAGCTGTGAGGCTTTATTGCAGT 299
Query 328 TTTGTAATGGAATATGATATACATACCATTCTGGACTTGGCTACTTTGGGAACAACTCTC 387
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 TTTGTAATGGAATATGACATACATACCATTCTGGACTTGGCTACTTTGGGAACAACACTC 359
Query 388 TGGGTTATATATATGATCCGTTTTAACCTCAAAACTACTTACATGGAGGAAAAAGACAAC 447
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 360 TGGGTTATATATATGATCCGTTTTAAGCTCAAAGCTACTTACATGGAGGAAAAAGACAAC 419
Query 448 TTCGCTCTCTATTATGTGCTGGCGCCCTGTGTTGTGCTAGCTGTATGGATTCATCCATCA 507
|| ||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||
Sbjct 420 TTTGCTCTCTATTATGTGCTCGTGCCCTGTGTCGTGCTAGCTGTATTGATTCATCCATCA 479
Query 508 ACGTCACACAATATATTGAATAGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACGTCACACAATATATTGAATAGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTT 539
Query 568 TCAGTACTGCCACAGTTGAGAGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCT 627
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAGTACTGCCACAGCTGAGAGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCT 599
Query 628 CATTATGTTTTTGCACTTGGAGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CATTATGTTTTTGCACTTGGAGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAG 659
Query 688 ATGATGGACACGCACGGACGACTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATG 747
|| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATTATGGACACCCGCGGACGCCTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATG 719
Query 748 GTTATAATCTCAGAAATAGTCCAAACATTCATATTGGCAGATTTCTGTTACTACTACGTT 807
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 GTTATAATCTCAGAAATCGTCCAAACATTCATCTTGGCAGATTTCTGTTACTACTACGTT 779
Query 808 AAAAGTGTTTTCGGTGGCCAGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTTATA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAAAGTGTTTTCGGTGGCCAGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTTATA 839
Query 868 AAGGAAAAAA-GAT 880
||| |||||| |||
Sbjct 840 AAGAAAAAAAAGAT 853
> Ahg490643 jgi|Araly1|490643|fgenesh2_kg.7__76__AT4G38790.1
Length=1033
Score = 883 bits (478), Expect = 0.0
Identities = 711/824 (86%), Gaps = 14/824 (2%)
Strand=Plus/Plus
Query 54 gaagaCTCCGATCCACGCGGTTTCGACATGGGTGAGGAGGCAGCCTCCAAAGGTGAAAGC 113
||||||||||||||||||||| | | ||||||| ||||| || |||||||||||||| ||
Sbjct 90 GAAGACTCCGATCCACGCGGTGTGGTCATGGGTAAGGAGACAACCTCCAAAGGTGAAGGC 149
Query 114 TTTCCTTGCCGTCGT-ATCTGGCATGGCGGCTCTT-GTTCTCCTCAAACTCATCGTTCAC 171
||| || ||||| || | |||||||||||||| || ||||| |||| | |||| ||||||
Sbjct 150 TTTTCTCGCCGTGGTCA-CTGGCATGGCGGCT-TTGGTTCTTCTCAGATTCATTGTTCAC 207
Query 172 GATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTT 231
|||||||||||||||||||||||||| || ||||||||||| || || |||| ||||||
Sbjct 208 GATCACGACAATCTCTTCGTTGCCGCTGAGGCTGTTCATTCCATCGGGATCTGTGTTCTC 267
Query 232 ATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGATTGTCATTGAAATCTCAGGAGCTT 291
||||| |||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||
Sbjct 268 ATCTACAAACTCATGAAGGAGAAGACCTGTGCCGGATTGTCACTGAAATCCCAGGAGCTT 327
Query 292 ACGGCGATATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGATATACAT 351
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 328 ACGGCGATATTTCTAGCTGTCAGGCTGTATTGTAGCTTTGTAATGGAATATGATATACAT 387
Query 352 ACCATTCTGGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATATATGATCCGTTTT 411
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 388 ACTATTCTGGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATTTATGATTCGTTTC 447
Query 412 AACCTCAAAA-CTACTTACATGGAGGAAAAAGACAACTT-CGCTCTCTATTATGTGCTGG 469
|| | || | ||| |||||||||||| ||||||||||| | |||||||||||||||| |
Sbjct 448 AAGTT-AAGAGCTAGTTACATGGAGGACAAAGACAACTTTC-CTCTCTATTATGTGCTTG 505
Query 470 CGCCCTGTGTTGTGCTAGCTGTATGGATTCATCCATCAACGTCACA-CAATATATTGAAT 528
||||||||||||| ||||||| | || |||||||| || || || || ||||| ||
Sbjct 506 CGCCCTGTGTTGTTTTAGCTGTGTTCATCCATCCATCCACCTCTCATCAC-ATATTAAAC 564
Query 529 AGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGTTGA-G 587
|| || || |||| ||| ||||| ||||| ||||||||||| || ||||| ||| | | |
Sbjct 565 AGGATTTCATGGGCATTATGTGTATACCTTGAAGCTGTTTCTGTTCTGCCTCAGCT-ACG 623
Query 588 AGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGG 647
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 624 AGTGATGCAGAACACAAAGATTGTTGAACCGTTCACGGCTCATTATGTTTTTGCACTTGG 683
Query 648 AGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAGAT-GATGGACACGCACGGAC 706
||||||||| || | |||||||| ||||||||||||||| | | ||||||||| ||||
Sbjct 684 AGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTACAGGTTG-TGGACACGCGGGGAC 742
Query 707 GACTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATGGTTATAATCTCAGAAATAG 766
| ||||||||| ||||||||||| | |||||||| |||||| | ||||||||||| |
Sbjct 743 GGTTGCTTGTAGCATTGGGTTATGGATTTTGGCCATCAATGGTTCTGATCTCAGAAATTG 802
Query 767 TCCAAACATTCATATTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTTTCGGTGGCC 826
| ||||| ||||| |||||||||||||||||||||||||| |||| |||||||| || |
Sbjct 803 TTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTACGTCCAAAGCGTTTTCGGAGGGC 862
Query 827 AGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTTATAAAG 870
|||||||||| ||||||| ||||| || || ||||||| ||||
Sbjct 863 AGCTTGTTCTCCGGCTTCCGTCTGGAGTAGTTTAAGTTAAAAAG 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5