BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21195.2

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899380 jgi|Araly1|899380|Al_scaffold_0004_30                      185    3e-46


> Ahg899380 jgi|Araly1|899380|Al_scaffold_0004_30
Length=282

 Score =  185 bits (100),  Expect = 3e-46
 Identities = 104/106 (98%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  150  GGTCGACGAATGGAAGGACCCATCGGAGGAAGCTCTCGCCGGCGGCAGAGGAATGTTTTG  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  72   GGTCGACGAATGGAAGGACCCATCGGAGGAAGCTCTCGCCGGCGGCAGAGGAATGTTTTG  131

Query  210  TGTAGTTCCCTTGACGAAAACTCTGTTTCAGACAGCTTCACAATCA  255
            |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  132  TGTAGTTCCCTTGACGAAGACTCTGTTGCAGACAGCTTCACAATCA  177


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 96/100 (96%), Gaps = 0/100 (0%)
 Strand=Plus/Plus

Query  328  AACTCAGCTGTCAAATTTCTGGATATGAAGTTTCAGAAATTGGCAAATCCTATGCACAAT  387
            |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  181  AACTCAGCCGTCAAATTTCTGGATATGAAGCTTCAGAAATTGGCAAATCCTATGCACAAT  240

Query  388  CCAAGTGGAGATTTAGGGTCAAAATCAAATGTGTTGGATT  427
            ||||||||||||| ||||||| ||||||||||||||||||
Sbjct  241  CCAAGTGGAGATTCAGGGTCAGAATCAAATGTGTTGGATT  280



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23864946042


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5