BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21200.1

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480976 jgi|Araly1|480976|fgenesh2_kg.4__36__AT2G21200.1           608    1e-173


> Ahg480976 jgi|Araly1|480976|fgenesh2_kg.4__36__AT2G21200.1
Length=471

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 429/474 (91%), Gaps = 19/474 (4%)
 Strand=Plus/Plus

Query  1    AAAACAAA-CCAAAATCATAATCAGCAGCTCAGAACTTGGACACTAAGTCTTCTTCCCTG  59
            |||||||| || ||||||||||||  | |||||||||||||||||||||||| |||||||
Sbjct  1    AAAACAAAGCC-AAATCATAATCAATAACTCAGAACTTGGACACTAAGTCTTTTTCCCTG  59

Query  60   ATCAAACTTT--GAGAGA--AATGGCTATGATGCGAGGTATTTTGGCTGCAAGAAAGATT  115
            ||||||||||  ||||||  || |||||||||||||||||||||||||||||| ||||||
Sbjct  60   ATCAAACTTTGAGAGAGAGCAAAGGCTATGATGCGAGGTATTTTGGCTGCAAGGAAGATT  119

Query  116  CTAACAAGCAAAGCAGCTTCAACACCAAAAGGATTTCTTGCGGTATATGTAGGGGAGAGT  175
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  
Sbjct  120  CTAACAAGCAAAGCAGCTTCGACACCAAAAGGATTTCTTGCAGTATATGTAGGGGAGAAC  179

Query  176  CAGAAGAAGAGATATATGGTGCCAGTTTCGTTCTTGAACCAGCCTTCTTTTCAAGCTCTG  235
            ||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||
Sbjct  180  CAGAAGAAGAGATATATGGTGCCAGTGACGTTCTTGAACCAGCCTTGTTTTCAAGCTCTG  239

Query  236  CTGAGTACAGCCGAAGAAGAGTTCGGGTTTGATCATCCTATGGGTGGCTTGACAATCCCT  295
            ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  240  CTGAGTAAAGCTGAAGAAGAGTTCGGGTTTGATCATCCCATGGGTGGCTTGACAATCCCT  299

Query  296  TGTCCTGAAGATACTTTTGTCGCTGCAGCTTCTCAGCTATGATAGTAGAACCAAACAGAt  355
            || |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| 
Sbjct  300  TGCCCTGAAGATACTTTTGTCGCTGTAGCTTCTCAGCTGCGATAGTAGAACCAAACAGAG  359

Query  356  ttt--ttttttt-ttttACTAGAGAATTAGAAACCTATGTATATACA-A-AC---C-TTT  406
                 ||||||| |||||||||||||||||||||| ||||||||| | | ||   | |||
Sbjct  360  AAACATTTTTTTCTTTTACTAGAGAATTAGAAACCAATGTATATATATATACATACCTTT  419

Query  407  TTCCTCTTTCTTGTTGAAAGAGTTGTT-CTAAAGGAGAGAAAT-TAAATGGAAA  458
            ||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||
Sbjct  420  TTCCTCTTTCTTGTTGAAAGAGTTGTTGC-AAAGGAGAGAAATGTAA-TGGAAA  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17017392694


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5