BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21210.1

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932045 jgi|Araly1|932045|scaffold_400033.1                        553    7e-157


> Ahg932045 jgi|Araly1|932045|scaffold_400033.1
Length=338

 Score =  553 bits (299),  Expect = 7e-157
 Identities = 325/338 (96%), Gaps = 0/338 (0%)
 Strand=Plus/Plus

Query  80   TCTATAAAAAGATCAACATCCATGGCTATCAGAATTTCTCGAGTGCTGCAATCATCAAAG  139
            ||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  1    TCTATAAGAAGATCAAAATCCATGGCTATCAGAATGTCTCGTGTGCTGCAATCATCAAAG  60

Query  140  CAACTTCTAAAATCGTTGTCACACTCATCAAACAATGTCGCTATTCCTAAAGGACACCTT  199
            |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct  61   CAACTTCTAAAATCGTTGTCACACTCATCAAACAATGTCGATATTCCAAAAGGACACCTT  120

Query  200  GCGGTTTACGTAGGAGAGATGATGCAGAAGAGGAGATTCGTGGTTCCAGTGACATACTTA  259
            ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  GCGGTTTACGTGGGAGAGAGGATGCAGAAGAGGAGATTCGTGGTTCCAGTGACGTACTTA  180

Query  260  AGTCACCCTTGTTTTCAAAAGCTTCTAAGAAAAGCAGAAGAAGAGTTTGGGTTTGATCAC  319
            |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  181  AGTCACCCTTCTTTTCAAAAGCTTCTAAGAAAAGCAGAGGAAGAATTTGGGTTTGATCAC  240

Query  320  CCAATGGGTGGCCTCACTATTCCCTGCACTGAACAAATCTTCATCGATCTCGCCTCTCGC  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCAATGGGTGGCCTCACTATTCCCTGCACTGAACAAATCTTCATCGATCTCGCCTCTCGC  300

Query  380  CTTAGCACTTCATCGTGATTCACACTGACCAGTAGATC  417
            ||||||||||||||||||||||||| ||||||||||||
Sbjct  301  CTTAGCACTTCATCGTGATTCACACGGACCAGTAGATC  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25732968975


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5