BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21230.3
Length=2014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480978 jgi|Araly1|480978|fgenesh2_kg.4__38__AT2G21230.1 2604 0.0
Ahg929024 jgi|Araly1|929024|scaffold_301481.1 425 5e-118
Ahg923800 jgi|Araly1|923800|scaffold_105081.1 230 4e-59
> Ahg480978 jgi|Araly1|480978|fgenesh2_kg.4__38__AT2G21230.1
Length=1940
Score = 2604 bits (1410), Expect = 0.0
Identities = 1766/1928 (92%), Gaps = 63/1928 (3%)
Strand=Plus/Plus
Query 101 agagagagagagaTTCACTTCCCCATTTCAGAAAATCAAAATGGGTGGTGGTGGTGATAC 160
|||||||||||||||| |||| |||||||||| ||||||||||| ||||||||| |||||
Sbjct 54 AGAGAGAGAGAGATTCGCTTCTCCATTTCAGACAATCAAAATGGTTGGTGGTGGCGATAC 113
Query 161 AACAGATACCAATATGATGCAGAGAGTTAATTCTTCTTCTGGTACATCGTCTTCTTCGAT 220
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 114 AACAGATACCAATATGATGCAGAGAGTTAATTCTTCTTCCGGTACATCGTCTTCTTCGAT 173
Query 221 CCCTAAACACAATCTTCACTTGAATCCTGCTCTTATCCGCTCTCACCATCACTTCCGTCA 280
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 174 CCCTAAACAGAATCTTCACTTGAATCCTGCTCTTATCCGCTCTCACCACCACTTCCGTCA 233
Query 281 CCCTTTCACCGGAGCTCCTCCACCGCCGATTCCACCCATTTCTCCTTACTCTCAGATCCC 340
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 GCCTTTCACCGGAG---CTCCGTCGCCGATTCCACCCATTTCTCCTTACTCTCAGATCCC 290
Query 341 GGCGACTTTACAACCTAGACATTCTCGCTCTATGTCGCAACCGTCTTCTTTCTTCTCCTT 400
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 291 GGCGACTTTACAACCTAGGCATTCTCGGTCTATGTCGCAACCGTCTTCTTTCTTCTCCTT 350
Query 401 TGATTCATTGCCGCCGTTAAATCCTTCTGCTCCGTCGGTTTCGGTGTCGGTGGAGGAGAA 460
|||||||||||||||||||||| | | | | |||||||||||||||||||||| ||
Sbjct 351 TGATTCATTGCCGCCGTTAAAT-C--C-G---C--CGGTTTCGGTGTCGGTGGAGGAAAA 401
Query 461 AACCGGTGCCGGATTTAGTCCTTCGT-TGCCTCCGTCACCGTTTACGATGTGTCATTCTT 519
|||||| ||||||||||| ||||| | ||||||| || |||||||||||||||| |||||
Sbjct 402 AACCGGCGCCGGATTTAGCCCTTC-TCTGCCTCCTTCGCCGTTTACGATGTGTCCTTCTT 460
Query 520 CTAGCTCTAGGAACGCCGGAGATGGAGAGAATCTACCTCCGAGAAAGTCGCATAGGCGTT 579
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 461 CTAGCTCTAGGAACGCTGGAGATGGAGAGAATCTACCGCCGAGAAAGTCTCATAGGCGTT 520
Query 580 CGAATAGTGATGTTACTTTTGGGTTTAGTTCAATGATGTCTCAGAATCAAAAG--T-CTC 636
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||| | |||
Sbjct 521 CGAATAGTGATGTTACTTTTGGGTTTTGTTCAGTGATGGGTCAGAATCAAAAGTCTCCTC 580
Query 637 C--T----CCTTTGAGTTCTTTGGAGAGATCGATCTCTGGTGAAGATACATCAGATTGGT 690
| | ||||||||||| || |||||||||||||| || | ||||| ||||||||||
Sbjct 581 CTTTGACCCCTTTGAGTTCATTAGAGAGATCGATCTCCGGCGGAGATATTTCAGATTGGT 640
Query 691 CTAATTTGGTGAAGAAAGAACCGAGAGAAGGCTTCTACAAGGGAAG--AAAA-CCAGAG- 746
|||||||||||||| | ||||| | |||| |||||| |||||||| |||| ||| ||
Sbjct 641 CTAATTTGGTGAAGGACGAACCAATAGAACGCTTCTTTAAGGGAAGAAAAAACCCACAGA 700
Query 747 GTTGAAGCAGCTATGGACGATGTTTTCACGGCTTATATGAATCTTGATAACATTGATGTC 806
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 701 G-TGAAGCAGCTATGGACGATGTTTTCACGGCTTATATGAATCTTGAAAACATTGATGTC 759
Query 807 TTGAATTCTTTTGGAGGTGAAGATGGCAAGAATGGGAATGAGAATGTGGAGGAGATGGAG 866
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 760 TTGAATTCTTTTGGAGGTGAAGATGGAAAGAATGGTAATGAGAATTTGGAGGAGATGGAG 819
Query 867 AGTAGTAGAGGTAGTGGTACAAAGAAGACGAATGGTGGAAGTAGTAGTGATTCTGAAGGA 926
|||||||||||||| || || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 820 AGTAGTAGAGGTAGCGGGACGAAGAAGACAAATGGCGGAAGTAGTAGTGATTCTGAAGGA 879
Query 927 GATAGCAGTGCGAGTGGGAATGTGAAGGTTGCGTTGAGTTCTTCTTCTTCAGGCGTGAAG 986
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 880 GAAAGCAGTGCGAGTGGGAATGTGAAGGTTGCGGTGAGTTCTTCTTCTTCAGGCGTGAAG 939
Query 987 AGAAGAGCAGGTGGAGATATTGCTCCTACTGGTAGACATTACAGGAGTGTTTCTATGGAC 1046
|||||||| || ||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 940 AGAAGAGCCGGCGGAGACATTGCTCCGACTAGTAGACATTACAGGAGTGTTTCTATGGAT 999
Query 1047 AGTTGTTTCATGGGGAAGTTGAATTTCGGCGACGAATCATCGCTAAAGCTTCCGCCTTCT 1106
|||||||||||||||||||||||||||||||| |||||||| || ||||||||| | ||
Sbjct 1000 AGTTGTTTCATGGGGAAGTTGAATTTCGGCGATGAATCATCTCTTAAGCTTCCG-C--CT 1056
Query 1107 TCATCAGCTAAAGTTTCCCCAACCAATTCAGGTGAAGGGAATTCAAGTGCTTATAGTGTT 1166
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1057 TCATCAGCTAAAGTTTCCCCAACCAATTCAGGTGAAGGGAATTCGAGTGCTTTTAGTGTC 1116
Query 1167 GAATTTGGAAACAGTGAGTTTACTGCAGCTGAAATGAAGAAGATTGCAGCTGATGAGAAA 1226
|||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1117 GAATTTGGAAACGGTGACTTTACTGCAGCTGAAATGAAGAAGATTGCAGCCGATGAGAAA 1176
Query 1227 CTCGCTGAGATTGTAATGGCTGACCCTAAGCGTGTTAAAAGAATCTTGGCGAACCGCGTA 1286
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1177 CTCGCTGAGATTGTAATGGCTGACCCTAAGCGTGTAAAAAGAATCTTGGCGAACCGCGTA 1236
Query 1287 TCTGCTGCACGTTCAAAGGAGCGGAAGACGCGATACATGGCAGAGTTGGAACACAAGGTG 1346
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1237 TCTGCTGCACGTTCAAAGGAGAGGAAGACGCGATACATGGCAGAGTTAGAACACAAGGTG 1296
Query 1347 CAGACACTTCAGACTGAAGCTACTACATTATCGGCTCAGCTCACACATTTGCAGAGAGAT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CAGACACTTCAGACTGAAGCTACTACATTATCGGCTCAGCTCACACATTTGCAGAGAGAT 1356
Query 1407 TCTATGGGGTTGACAAACCAGAACAGTGAGCTGAAGTTTCGTCTTCAAGCTATGGAGCAG 1466
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 TCAATGGGGTTGACTAACCAGAACAGTGAGCTGAAGTTTCGTCTTCAAGCTATGGAGCAG 1416
Query 1467 CAAGCACAACTCCGCGATGGTATGCACATTATCAAAACTCTGTCAGAGAAACTGAATGAA 1526
||||||||||||||||||| | || | |||||||||||||| ||||
Sbjct 1417 CAAGCACAACTCCGCGATG-----C---TT-T---------GTCAGAGAAACTGACTGAA 1458
Query 1527 GAAGTCCAGCGGTTGAAACTGGTGATAGGGGAGCCGAACCGCAGGCAAAGTGGGAGCAGC 1586
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1459 GAAGTCCAGCGGTTGAAACTGGTCATTGGGGAGCCGAACCGCAGGCAAAGTGGCAGCAGC 1518
Query 1587 AGCAGCGAATCAAAGATGTCACTAAACCCGGAGATGTTTCAGCAGCTTAGCATAAGTCAG 1646
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1519 AGCAGCGAATCAAAGACGTCACTAAACCCGGAGATGTTTCAGCAGCTTAGCATAAGCCAG 1578
Query 1647 TTACAACACCAACAGATGCAGCATTCCAATCAGTGTAGCACAATGAAAGCAAAGCACACT 1706
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1579 TTACAACACCAGCAGATGCAGCATTCCAATCAGAGTAGCACAATGAAAGCAAAGCACA-T 1637
Query 1707 -TCAAACGACTAGGGTAAGTAAAACTGCGATCCGCAGTTGTCTAGTTACATATATGATAA 1765
|||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1638 GTCAAACGAATAGGGTAAGTAAAACCGCGATCCGCAGTT-TCTAGTTACATATATGATAA 1696
Query 1766 GAATCTTTTGTGCAGAGTTCTGTTTTTGGAAGTTTTAAAGAAACATATATAAAGATTATG 1825
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 GAATCTTTTGTGCAGAGTTTTGTTTTTGGAAGTTTTAAAGAAACATATATAAAGATTATG 1756
Query 1826 TCCGGGAAATTTGATCATATTTCCTGAAACATACACACATATATATAGTGGTAATGGAGG 1885
||||||||||| ||| ||||||| |||||||| | | |||||||||||||||| |||||
Sbjct 1757 TCCGGGAAATTCGATTGTATTTCCCGAAACATATATATATATATATAGTGGTAACGGAGG 1816
Query 1886 ACTTTCTTTCTGGACCAGGTGATCTTATGTTGTTTTGGTCATATATTTACACAGTTAGGA 1945
|| ||||||||||||| |||||||||||||||||||||||||||| || | ||||||
Sbjct 1817 GCTCTCTTTCTGGACCAAGTGATCTTATGTTGTTTTGGTCATATAT--ACCC--TTAGGA 1872
Query 1946 TTTTATTTCCCTTTGGATTTTGGAT-----A-A-TCTATGAGACAATTTTTAAGGTTTAT 1998
||||||||||||||||||||||||| | | |||||||||||||| |||||||| |
Sbjct 1873 TTTTATTTCCCTTTGGATTTTGGATTTTGGATAATCTATGAGACAATTCTTAAGGTTGCT 1932
Query 1999 AAATATTA 2006
| ||||||
Sbjct 1933 ATATATTA 1940
> Ahg929024 jgi|Araly1|929024|scaffold_301481.1
Length=367
Score = 425 bits (230), Expect = 5e-118
Identities = 310/346 (90%), Gaps = 16/346 (5%)
Strand=Plus/Plus
Query 209 GTCTTCTTCGATCCCTAAACACAATCTTCACTTGAATCCTGCTCTTATCCGCTCTCACCA 268
||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||||
Sbjct 11 GTCTTCTTCGATCCCTAAACAGAATCTTCACTTGAATCCTTCTCATATCAGCTCTCACCA 70
Query 269 TCACTTCCGTCACCCTTTCACCGGAGCTCCTCCACCGCCGATTCCACCCATTTCTCCTTA 328
|||||||||||| ||||||||||| | |||| ||||||||||| ||||||||||||||
Sbjct 71 TCACTTCCGTCAGCCTTTCACCGG-G--GCTCCGCCGCCGATTCCTCCCATTTCTCCTTA 127
Query 329 CTCTCAGATCCCGGCGACTTTACAACCTAGACATTCTCGCTCTATGTCGCAACCGTCTTC 388
||||||||||||| |||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 128 CTCTCAGATCCCGACGACTTTACAACCTAGGCATTCTCGGTCTATGTCGCAACCATCGTC 187
Query 389 TTTCTTCTCCTTTGATTCATTGCCGCCGTTAAATCCTTCTGCTCCGTCGGTTTCGGTGTC 448
||||||||||||||||||||||||||||| |||||| || | | | ||||||||||
Sbjct 188 TTTCTTCTCCTTTGATTCATTGCCGCCGTCAAATCC----GC-C-G--G-TTTCGGTGTC 238
Query 449 GGTGGAGGAGAAAACCGGTGCCGGATTTAGTCCT-TCGT-TGCCTCCGTCACCGTTTACG 506
||||||||| |||||||| ||||||||||| ||| || | ||||||||||||||||||||
Sbjct 239 GGTGGAGGAAAAAACCGGCGCCGGATTTAG-CCTCTC-TCTGCCTCCGTCACCGTTTACG 296
Query 507 ATGTGTCATTCTTCTAGCTCTAGGAACGCCGGAGATGGAGAGAATC 552
||||||||||||||||||||| |||||| || |||||| |||||||
Sbjct 297 ATGTGTCATTCTTCTAGCTCTCGGAACGTCGAAGATGGGGAGAATC 342
> Ahg923800 jgi|Araly1|923800|scaffold_105081.1
Length=217
Score = 230 bits (124), Expect = 4e-59
Identities = 178/202 (88%), Gaps = 11/202 (5%)
Strand=Plus/Plus
Query 352 AACCTAGACATTCTCGCTCTATGTCGCAACCGTCTTCTTTCTTCTCCTTTGATTCATTGC 411
||||||| |||||||| | |||||||||||| || |||||||||||||||||||||||||
Sbjct 1 AACCTAGGCATTCTCGGTATATGTCGCAACCATCGTCTTTCTTCTCCTTTGATTCATTGC 60
Query 412 CGCCGTTAAATCCTTCTGCTCCGTCGGTTTCGGTGTCGGTGGAGGAGAAAACCGGTGCCG 471
|||||| |||| | | | | |||||||||||||||||||||| |||||||| ||||
Sbjct 61 CGCCGTCAAAT-C--C-G---C--CGGTTTCGGTGTCGGTGGAGGAAAAAACCGGCGCCG 111
Query 472 GATTTAGTCCTTCGT-TGCCTCCGTCACCGTTTACGATGTGTCATTCTTCTAGCTCTAGG 530
||||||| || || | |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 112 GATTTAGCCCCTC-TCTGCCTCTGTCACCGTTTACGATGTGTCATTCTTCTAGCTCTGGG 170
Query 531 AACGCCGGAGATGGAGAGAATC 552
|||||||||||||| |||||||
Sbjct 171 AACGCCGGAGATGGGGAGAATC 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75723407060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5