BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21235.1

Length=1653
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932049 jgi|Araly1|932049|scaffold_400037.1                        154    2e-36


> Ahg932049 jgi|Araly1|932049|scaffold_400037.1
Length=1951

 Score =  154 bits (83),  Expect = 2e-36
 Identities = 168/205 (82%), Gaps = 22/205 (11%)
 Strand=Plus/Plus

Query  22   ACTCAATACCAGCAGAATCCTTTCAGTACTGATGATGGTGGCCAGAGCACCGGCGTGTCA  81
            ||||||||||||||||||||||| || ||  |  | |||||||||||||| ||| |||||
Sbjct  54   ACTCAATACCAGCAGAATCCTTTTAGCAC-CA--ACGGTGGCCAGAGCACAGGCATGTCA  110

Query  82   C--TCT-------CTTC-CCG----GAC-TTCTC-TGTCACCACCACTGATCCGTTATCC  125
            |  |||       |||| |||     || |||||  ||| |||||||||||||||| |||
Sbjct  111  CTGTCTCACCAGACTTCTCCGTCAACACTTTCTCAGGTC-CCACCACTGATCCGTTTTCC  169

Query  126  AGCCGGGTCGCCGGACTTCAGCCCCGGACCACGGTGTACGACTCAACCGTCCCCTACCTT  185
            ||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||| 
Sbjct  170  AGCCGGGTCACCAGACTTCAGCCCCGGACCACGGTGTACGACTCAGCCGTTCCCTACCTA  229

Query  186  CTCCGACTTCACTCA-AGCGAGTCC  209
            ||| ||||||||||| | |||||||
Sbjct  230  CTCTGACTTCACTCAGA-CGAGTCC  253


 Score =  135 bits (73),  Expect = 7e-31
 Identities = 190/244 (78%), Gaps = 18/244 (7%)
 Strand=Plus/Plus

Query  232  CCGGCAAGCTTTACACC-TTCGTTTAGCTTCTCCAACATTCAC-CAAATGATTCCTACGC  289
            ||| |||||||||| || |||   || || |||  || ||||| |||| || |||| |  
Sbjct  366  CCGACAAGCTTTACTCCGTTC-CCTACCTCCTCTGAC-TTCACTCAAACGAGTCCTTCAT  423

Query  290  CGTCGTCGTCCCATAACTCAAAGGCGTCGGTGAGCTCTGCTTCGTCGTCTAGCTTCTACT  349
            ||||  ||| |||||||||| ||| | ||  || |||  || ||||||||||||||||||
Sbjct  424  CGTCAACGTTCCATAACTCACAGGGGCCGACGATCTCCACTCCGTCGTCTAGCTTCTACT  483

Query  350  TTCCCCAGACGAGTCCTTCATCAT-GCTC--T-A-CTC--CGT-CGTCGTTCAGTCCA-G  400
            |||||||||||||||||||| | | || |  | | |||  | | || ||||||||| | |
Sbjct  484  TTCCCCAGACGAGTCCTTCACCGTCGC-CGGTGAGCTCTTC-TACGCCGTTCAGTC-ATG  540

Query  401  ACTCGTTT-TCTCACTCCAACACCGGACCATGGTCGATCCCTCAGCCTTCCCCTGTGTTC  459
            |||| ||| |  ||||||||| |||||||||||||||| ||||| || || | |||||||
Sbjct  541  ACTCATTTATG-CACTCCAACCCCGGACCATGGTCGATACCTCAACCATCGCATGTGTTC  599

Query  460  TCAT  463
            ||||
Sbjct  600  TCAT  603



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61972828615


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5