BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21237.1
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480981 jgi|Araly1|480981|fgenesh2_kg.4__41__AT2G21237.1 669 0.0
> Ahg480981 jgi|Araly1|480981|fgenesh2_kg.4__41__AT2G21237.1
Length=505
Score = 669 bits (362), Expect = 0.0
Identities = 470/519 (91%), Gaps = 19/519 (4%)
Strand=Plus/Plus
Query 23 AACAACAAAATGATGGAGAAAGCCACAGTGGCGCATGTGGAGACGCATCAA-CGGTCACA 81
|||||||||||| | |||||||||||||| | |||||||| ||| ||| ||||
Sbjct 1 AACAACAAAATGGTAGAGAAAGCCACAGT-----A----GAGACGCAGCAAGCGG-CACA 50
Query 82 AGAGATATGGTTTCTTGGCGCCGCAAGAGCCTTCTTGCAAATTCCGAATCCGGGGATTGT 141
||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 51 AGAGATATGGTTTCTTGCCTCCGCAAGAGCCTTCTTGCAAATTCCGAATCCGGGTATTGT 110
Query 142 CAAAGTTTTTGTCCTAAGCAGCTTGACTACATTCACCTCAGGAATGGCTTTAGTCATTGA 201
|||||||| |||||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct 111 TAAAGTTTTCGTCCTAAGCAGCTTGATTACGTTCACCTCAGGAATTGCCTTAGTCATTGA 170
Query 202 GTGGATCTGTCACGGAAAGAGTCACACGGGATTCGGGTGGATCATCTACTATGCATTGTT 261
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 171 ATGGATCTGTCACGGAAAGAGTCACACCGGATTTGGGTGGATCATCTACTACGCATTGTT 230
Query 262 CTTGATGTGTCTTCCTCTTGTCATCTTGATCGGTCTTCATATTCTCGT-CAGGCGCGGCT 320
|||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||
Sbjct 231 CTTGATGTGTCTTCCTCTTGTCATCTTGATCGGTCTTCATATCCTCGTGC-GTCGCGGCT 289
Query 321 CAGATCAGATTGTGGATTCAACTC-CAAGCAAAGAACCGTGTGTGGTGCAGAATCAGAGT 379
||||||||||||| |||||||| | |||||||||| || ||||| |||||||||||| ||
Sbjct 290 CAGATCAGATTGTAGATTCAAC-CACAAGCAAAGAGCCATGTGTTGTGCAGAATCAGTGT 348
Query 380 ACCGAGACG-ACTAAACGAACTGAAGAAACGGTGAAAAACAGCTGCCAAAGTTTAGCCGT 438
||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 349 ACCGAGA-GTACTAAACGAACTGAAGAAACGGAGAAAAACAGTTGCCAAAGTTTAGCCGT 407
Query 439 TGTGGTTGCTCCGGATGAC-AAGAAGATGCCGAGGATAAAACGCGCAGTGTCATTCCCGT 497
||||||||||||||||||| || ||||||||||||||||||||||| || || ||||| |
Sbjct 408 TGTGGTTGCTCCGGATGACGAA-AAGATGCCGAGGATAAAACGCGCTGTTTCGTTCCCAT 466
Query 498 CTCACGGCGAAGTAAGATCATGTCGAACTCGTTAGCAAA 536
||||||||||||||||||||||||| |||||||||||||
Sbjct 467 CTCACGGCGAAGTAAGATCATGTCGTACTCGTTAGCAAA 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24970510635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5