BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21240.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480982 jgi|Araly1|480982|fgenesh2_kg.4__42__AT2G21240.1 1772 0.0
Ahg327841 jgi|Araly1|327841|fgenesh1_pm.C_scaffold_7000068 518 5e-146
> Ahg480982 jgi|Araly1|480982|fgenesh2_kg.4__42__AT2G21240.1
Length=1196
Score = 1772 bits (959), Expect = 0.0
Identities = 1124/1203 (93%), Gaps = 14/1203 (1%)
Strand=Plus/Plus
Query 6 tctctctctctctctACCCTTTGGATCTTTCTTCTCGATC--AA-TTATCCATTTTGCCC 62
||||||||||||||| |||||||||||||||||||| ||| || ||||||| |||||||
Sbjct 1 TCTCTCTCTCTCTCTTCCCTTTGGATCTTTCTTCTCAATCAAAATTTATCCA-TTTGCCC 59
Query 63 AGATTTTTTCCAGAAGCTCATCGAATTCATCGAATCACAATGTTTGAAATTTGGTTTCAC 122
|||||| ||||| ||||||||| |||| |||||||||||||||||| |||||||||||||
Sbjct 60 AGATTTCTTCCACAAGCTCATCAAATTTATCGAATCACAATGTTTGGAATTTGGTTTCAC 119
Query 123 TGTTGCTGAGTGTGTTTGGAGGAGAAGCTTGATTGGTTCGGTGTTTCACTGTTTGAAGAT 182
||||||||||||||| ||| |||||||||||| |||| | |||| || |||||||||
Sbjct 120 TGTTGCTGAGTGTGTGTGGGGGAGAAGCTTGAAAAGTTCTTTTTTTCTCTTTTTGAAGAT 179
Query 183 TATAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGCGCGGTTCAAGCCCGATTACTT 242
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 TATAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGGGCGGTTCAAGCCCGATTACTT 239
Query 243 CAAAGGTGCACAATCTATGTGGAATATGATTCCCCAGCATCAGATTAAGGAACAACATAA 302
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 240 CAAAGGTGCACAATCTATGTGGAATATGATGCCTCAGCATCAGATTAAGGAACAACATAA 299
Query 303 TGCGTTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGAGACGCTGCTGTACA 362
||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 300 TGCCTTGGTGATGAATAAGAAGATCATGTCTATCCTTGCCGAGAGGGACGCTGCTGTACA 359
Query 363 TGAAAGAAATCAAGCTGTCTCTGCTAAAAAGGAAGCTGTCGCTGCTCGGGACGAAGCGCT 422
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 360 TGAAAGGAATCAAGCTGTCTCTGCTAAAAAGGAAGCAGTAGCTGCTCGGGACGAAGCCCT 419
Query 423 TCAGCAACGTGACAAAGCTCTTTCTGAGAGAGATAAAGCTTTGATAGAGAGAGATAATGC 482
||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 420 TCAGCAACGGGACAAAGCTCTTTCTGAAAGAGATAAAGCATTGATAGAGAGAGACAATGC 479
Query 483 TTATGCTGCTCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTGGTGGGAAGTG 542
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 GTATGCTGCGCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTGGTGGGAAGCG 539
Query 543 TGTTGATGGAGATGATTGTTTTGGTATTGGGGAACCCCACAAACTTGAAGTCTTCCCTTT 602
||||||||||||||||||||| |||||||| |||||||||||||| | ||| |||||||
Sbjct 540 TGTTGATGGAGATGATTGTTTCGGTATTGGAGAACCCCACAAACTCCATGTCGTCCCTTT 599
Query 603 GTCAACTATTCCGCCTGAGGTTA-CAA--ACACGAAGGTGGTGAAC-AAAAGGAAGAAAG 658
|||||||||||||| ||||||| ||| ||||| |||| || ||||||||||| |
Sbjct 600 ATCAACTATTCCGCCCGAGGTTACCAATGGTACGAA---GGTG-ACAAAAAGGAAGAAGG 655
Query 659 AGAACAAGCAGGGACTATCAAAGGTGAAAAAAGTGGGTGAAGATCTGAACCGTCGAGTTC 718
||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 656 AGAACAAGCAGGGACAATCAAAGGTGAAGAAAGTGGGTGAAGATCTCAACCGTCGAGTTG 715
Query 719 CTGCTCCTGGAAAGAAATCTAGAACAGATTGGGACAGTCAAGATGTCGGTTTGAACTTAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTGCTCCTGGAAAGAAATCTAGAACAGATTGGGACAGTCAAGATGTCGGTTTGAACTTAG 775
Query 779 TCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTTCGTGCACAGGCTCTACGCGTC 838
|||||||||||||||||||||||||||||||||||||| | |||||||||||| | | ||
Sbjct 776 TCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTACATGCACAGGCTCTGCTCATC 835
Query 839 AGTGTTACAAATGGGGAAATGGCGGCTGGCAATCGTCTTGCTGCACAACCACCTTATCCC 898
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 836 AGTGTTACAAATGGGGAAATGGAGGCTGGCAATCATCTTGCTGCACAACCACCTTATCCC 895
Query 899 AGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGATGGGCGGTAGGAAAATGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGATGGGCGGTAGGAAAATGA 955
Query 959 GCGGAAACGTTTTCTCGAGATTACTCAGCCGTTTATCAGCAGAAGGATATGATCTCTCGT 1018
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 956 GTGGAAACGTTTTCTCGAGATTACTCAGCCGTTTAGCAGCAGAAGGATATGATCTCTCGT 1015
Query 1019 GTCCTGTTGATCTTAAAGACTATTGGGCTAGGCACGGGACAAACCGCTACATCACTATCA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GTCCTGTTGATCTTAAAGACTATTGGGCTAGGCACGGGACAAACCGCTACATCACTATCA 1075
Query 1079 AGTAGCCTCTGTTGTTTACACAGTCCAAGTATGTTTCTCTCGTCTTCTTAAGATTAGGTG 1138
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1076 AGTAGCCTCTGTTGTCTACACAGTCCAAGTATGTTTATCTCGTCTTCTTAAGATTAGGTG 1135
Query 1139 TTGTCTTTGTCTTTATTGTCCATAGTTTGTTCTTTGTTGTGTATGGTAAAACCATTGTTA 1198
|||||||||||| |||||| |||||| |||| ||||||||||||||||||||||| |||
Sbjct 1136 TTGTCTTTGTCTG-ATTGTCTATAGTT-GTTCGTTGTTGTGTATGGTAAAACCATTATTA 1193
Query 1199 TGT 1201
|||
Sbjct 1194 TGT 1196
> Ahg327841 jgi|Araly1|327841|fgenesh1_pm.C_scaffold_7000068
Length=1335
Score = 518 bits (280), Expect = 5e-146
Identities = 652/827 (79%), Gaps = 43/827 (5%)
Strand=Plus/Plus
Query 185 TAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGCGCGGTTCAAGCCCGATTACTTCA 244
|||||| ||||||| |||||| | |||||| |||| ||| | ||||||||||||| ||
Sbjct 36 TAAGAG-AATGGAGAGTGGTGGGCTGTATGAAAATGGGCGCTACAAGCCCGATTACAACA 94
Query 245 AAGGTG-CACAATCTATGTGGAATATGATTCCCCAGCATCAGATTAAGGAACAACATAAT 303
|||| | ||||||| ||| ||||||| | || ||||||||||| ||||| |||||||||
Sbjct 95 AAGG-GACACAATC--TGT-GAATATGGTGCCTCAGCATCAGATAAAGGAGCAACATAAT 150
Query 304 GCGTTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGAGACGCTGCTGTACAT 363
|| ||||||||||||||||||||||||||||||||||||||||| || || || || ||
Sbjct 151 GCATTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGGGATGCAGCAGT-CAA 209
Query 364 G-AAAGAAATC-AAGCTGTCTCTGCTA-AAAAGGAAGC-TGTCGCTGCTCGGGACGAAGC 419
| ||| ||| | |||| || | || | ||||| |||| | | || ||||| || |||||
Sbjct 210 GGAAATAAA-CGAAGCCGTAGCAGCAACAAAAG-AAGCAT-TAGCCGCTCGTGATGAAGC 266
Query 420 GCTTCAGCAACGTGACAAAGCTCTTTCTGAGAGAGATAAAGCTTTGATAGAGAGAGATAA 479
||| |||| || ||||||||||| ||||| |||||||| ||| | || |||| ||| ||
Sbjct 267 ACTTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTATCATGGAGACAGA-AA 325
Query 480 -TGC-TTATGCTGCTCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTC-TGGTGG 536
||| ||| |||||||| | ||| |||||| | ||| |||| |||||| || ||
Sbjct 326 GTGCGTTAAA-TGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGTG-TGC 383
Query 537 GAAGTGTGTTGATGGAGATGATTGTTTTGGTAT-TGGGGAACCCCACAAACTTGAAGTCT 595
||| ||| || | | | ||| || || || ||| |||| || || ||
Sbjct 384 CAAGCGTGGTGGTTCCCAC-A--GTTGTG-TAACTGACGAAAGCCACTTACCTGCCC-CT 438
Query 596 TC-CCTTTGTCAACTATTCCGCCTGAGGTTA-CAAACACGAAGGTGGTGAAC-AAAAGGA 652
|| ||| | ||||||||||| ||||| | | | ||||||| | | | | |||||||
Sbjct 439 TCACCTATATCAACTATTCCACCTGAAGC-AGCCAACACGA-GAC--T-AGCCAAAAGGA 493
Query 653 AGAAAGAGAACAAGCAGGGA-CT--ATCAAAGGTGAAA-AAAGTGGGTGAAGATCTGAAC 708
||||||||| ||||||||| | |||||||| |||| |||||||| || |||||||||
Sbjct 494 AGAAAGAGAGTAAGCAGGGAGCACGATCAAAGG-GAAAGAAAGTGGGCGAGGATCTGAAC 552
Query 709 CGTCGAGTTCCTGCTCCTGGAAAGAAAT-CTAGAACAGATTGGGACAGTCAAGATGTCGG 767
| || |||| || |||| ||||||||| | |||| ||||||||||||| | ||||||||
Sbjct 553 CATCAAGTTGCTTCTCCGGGAAAGAAAAGC-AGAAAAGATTGGGACAGTTACGATGTCGG 611
Query 768 TTTGAACTTAGTCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTTCGTGCACAGG 827
||| ||| ||||||| ||||| |||||||||||||| || |||||||| | ||||| ||
Sbjct 612 TTTAAACCTAGTCACATTCGACGAGACGACAATGCCAGTGCCCATGTGCACTTGCACCGG 671
Query 828 CTCTACGCGTCAGTGTTACAAATGGGGAAATGGCGGCTGGCAATCGTCTTGCTGCACAAC 887
|| | |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 672 GACTGCTCGTCAGTGTTACAAGTGGGGAAACGGCGGTTGGCAATCTTCTTGCTGCACAAC 731
Query 888 CACCTTATCCCAGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCG-GATGGGCG 946
||| || || |||||||| | |||||||||||||||||| |||||||||| | ||| ||
Sbjct 732 CACTTTGTCTCAGTATCCGCTCCCGCAGATGCCAAACAAGCGGCATTCTCGAG-TGGCCG 790
Query 947 GTAGGAAAATGAGCGGAAACGTTTTCTCGAGATTACTCAGCCGTTTA 993
|||||||||||||||||| || ||||| || ||||| || ||||||
Sbjct 791 GTAGGAAAATGAGCGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5