BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21240.1 Length=1282 Score E Sequences producing significant alignments: (Bits) Value Ahg480982 jgi|Araly1|480982|fgenesh2_kg.4__42__AT2G21240.1 1772 0.0 Ahg327841 jgi|Araly1|327841|fgenesh1_pm.C_scaffold_7000068 518 5e-146 > Ahg480982 jgi|Araly1|480982|fgenesh2_kg.4__42__AT2G21240.1 Length=1196 Score = 1772 bits (959), Expect = 0.0 Identities = 1124/1203 (93%), Gaps = 14/1203 (1%) Strand=Plus/Plus Query 6 tctctctctctctctACCCTTTGGATCTTTCTTCTCGATC--AA-TTATCCATTTTGCCC 62 ||||||||||||||| |||||||||||||||||||| ||| || ||||||| ||||||| Sbjct 1 TCTCTCTCTCTCTCTTCCCTTTGGATCTTTCTTCTCAATCAAAATTTATCCA-TTTGCCC 59 Query 63 AGATTTTTTCCAGAAGCTCATCGAATTCATCGAATCACAATGTTTGAAATTTGGTTTCAC 122 |||||| ||||| ||||||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 60 AGATTTCTTCCACAAGCTCATCAAATTTATCGAATCACAATGTTTGGAATTTGGTTTCAC 119 Query 123 TGTTGCTGAGTGTGTTTGGAGGAGAAGCTTGATTGGTTCGGTGTTTCACTGTTTGAAGAT 182 ||||||||||||||| ||| |||||||||||| |||| | |||| || ||||||||| Sbjct 120 TGTTGCTGAGTGTGTGTGGGGGAGAAGCTTGAAAAGTTCTTTTTTTCTCTTTTTGAAGAT 179 Query 183 TATAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGCGCGGTTCAAGCCCGATTACTT 242 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 180 TATAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGGGCGGTTCAAGCCCGATTACTT 239 Query 243 CAAAGGTGCACAATCTATGTGGAATATGATTCCCCAGCATCAGATTAAGGAACAACATAA 302 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 240 CAAAGGTGCACAATCTATGTGGAATATGATGCCTCAGCATCAGATTAAGGAACAACATAA 299 Query 303 TGCGTTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGAGACGCTGCTGTACA 362 ||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 300 TGCCTTGGTGATGAATAAGAAGATCATGTCTATCCTTGCCGAGAGGGACGCTGCTGTACA 359 Query 363 TGAAAGAAATCAAGCTGTCTCTGCTAAAAAGGAAGCTGTCGCTGCTCGGGACGAAGCGCT 422 |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 360 TGAAAGGAATCAAGCTGTCTCTGCTAAAAAGGAAGCAGTAGCTGCTCGGGACGAAGCCCT 419 Query 423 TCAGCAACGTGACAAAGCTCTTTCTGAGAGAGATAAAGCTTTGATAGAGAGAGATAATGC 482 ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct 420 TCAGCAACGGGACAAAGCTCTTTCTGAAAGAGATAAAGCATTGATAGAGAGAGACAATGC 479 Query 483 TTATGCTGCTCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTGGTGGGAAGTG 542 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 480 GTATGCTGCGCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTGGTGGGAAGCG 539 Query 543 TGTTGATGGAGATGATTGTTTTGGTATTGGGGAACCCCACAAACTTGAAGTCTTCCCTTT 602 ||||||||||||||||||||| |||||||| |||||||||||||| | ||| ||||||| Sbjct 540 TGTTGATGGAGATGATTGTTTCGGTATTGGAGAACCCCACAAACTCCATGTCGTCCCTTT 599 Query 603 GTCAACTATTCCGCCTGAGGTTA-CAA--ACACGAAGGTGGTGAAC-AAAAGGAAGAAAG 658 |||||||||||||| ||||||| ||| ||||| |||| || ||||||||||| | Sbjct 600 ATCAACTATTCCGCCCGAGGTTACCAATGGTACGAA---GGTG-ACAAAAAGGAAGAAGG 655 Query 659 AGAACAAGCAGGGACTATCAAAGGTGAAAAAAGTGGGTGAAGATCTGAACCGTCGAGTTC 718 ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| Sbjct 656 AGAACAAGCAGGGACAATCAAAGGTGAAGAAAGTGGGTGAAGATCTCAACCGTCGAGTTG 715 Query 719 CTGCTCCTGGAAAGAAATCTAGAACAGATTGGGACAGTCAAGATGTCGGTTTGAACTTAG 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CTGCTCCTGGAAAGAAATCTAGAACAGATTGGGACAGTCAAGATGTCGGTTTGAACTTAG 775 Query 779 TCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTTCGTGCACAGGCTCTACGCGTC 838 |||||||||||||||||||||||||||||||||||||| | |||||||||||| | | || Sbjct 776 TCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTACATGCACAGGCTCTGCTCATC 835 Query 839 AGTGTTACAAATGGGGAAATGGCGGCTGGCAATCGTCTTGCTGCACAACCACCTTATCCC 898 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 836 AGTGTTACAAATGGGGAAATGGAGGCTGGCAATCATCTTGCTGCACAACCACCTTATCCC 895 Query 899 AGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGATGGGCGGTAGGAAAATGA 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 AGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGATGGGCGGTAGGAAAATGA 955 Query 959 GCGGAAACGTTTTCTCGAGATTACTCAGCCGTTTATCAGCAGAAGGATATGATCTCTCGT 1018 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 956 GTGGAAACGTTTTCTCGAGATTACTCAGCCGTTTAGCAGCAGAAGGATATGATCTCTCGT 1015 Query 1019 GTCCTGTTGATCTTAAAGACTATTGGGCTAGGCACGGGACAAACCGCTACATCACTATCA 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 GTCCTGTTGATCTTAAAGACTATTGGGCTAGGCACGGGACAAACCGCTACATCACTATCA 1075 Query 1079 AGTAGCCTCTGTTGTTTACACAGTCCAAGTATGTTTCTCTCGTCTTCTTAAGATTAGGTG 1138 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1076 AGTAGCCTCTGTTGTCTACACAGTCCAAGTATGTTTATCTCGTCTTCTTAAGATTAGGTG 1135 Query 1139 TTGTCTTTGTCTTTATTGTCCATAGTTTGTTCTTTGTTGTGTATGGTAAAACCATTGTTA 1198 |||||||||||| |||||| |||||| |||| ||||||||||||||||||||||| ||| Sbjct 1136 TTGTCTTTGTCTG-ATTGTCTATAGTT-GTTCGTTGTTGTGTATGGTAAAACCATTATTA 1193 Query 1199 TGT 1201 ||| Sbjct 1194 TGT 1196 > Ahg327841 jgi|Araly1|327841|fgenesh1_pm.C_scaffold_7000068 Length=1335 Score = 518 bits (280), Expect = 5e-146 Identities = 652/827 (79%), Gaps = 43/827 (5%) Strand=Plus/Plus Query 185 TAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGCGCGGTTCAAGCCCGATTACTTCA 244 |||||| ||||||| |||||| | |||||| |||| ||| | ||||||||||||| || Sbjct 36 TAAGAG-AATGGAGAGTGGTGGGCTGTATGAAAATGGGCGCTACAAGCCCGATTACAACA 94 Query 245 AAGGTG-CACAATCTATGTGGAATATGATTCCCCAGCATCAGATTAAGGAACAACATAAT 303 |||| | ||||||| ||| ||||||| | || ||||||||||| ||||| ||||||||| Sbjct 95 AAGG-GACACAATC--TGT-GAATATGGTGCCTCAGCATCAGATAAAGGAGCAACATAAT 150 Query 304 GCGTTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGAGACGCTGCTGTACAT 363 || ||||||||||||||||||||||||||||||||||||||||| || || || || || Sbjct 151 GCATTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGGGATGCAGCAGT-CAA 209 Query 364 G-AAAGAAATC-AAGCTGTCTCTGCTA-AAAAGGAAGC-TGTCGCTGCTCGGGACGAAGC 419 | ||| ||| | |||| || | || | ||||| |||| | | || ||||| || ||||| Sbjct 210 GGAAATAAA-CGAAGCCGTAGCAGCAACAAAAG-AAGCAT-TAGCCGCTCGTGATGAAGC 266 Query 420 GCTTCAGCAACGTGACAAAGCTCTTTCTGAGAGAGATAAAGCTTTGATAGAGAGAGATAA 479 ||| |||| || ||||||||||| ||||| |||||||| ||| | || |||| ||| || Sbjct 267 ACTTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTATCATGGAGACAGA-AA 325 Query 480 -TGC-TTATGCTGCTCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTC-TGGTGG 536 ||| ||| |||||||| | ||| |||||| | ||| |||| |||||| || || Sbjct 326 GTGCGTTAAA-TGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGTG-TGC 383 Query 537 GAAGTGTGTTGATGGAGATGATTGTTTTGGTAT-TGGGGAACCCCACAAACTTGAAGTCT 595 ||| ||| || | | | ||| || || || ||| |||| || || || Sbjct 384 CAAGCGTGGTGGTTCCCAC-A--GTTGTG-TAACTGACGAAAGCCACTTACCTGCCC-CT 438 Query 596 TC-CCTTTGTCAACTATTCCGCCTGAGGTTA-CAAACACGAAGGTGGTGAAC-AAAAGGA 652 || ||| | ||||||||||| ||||| | | | ||||||| | | | | ||||||| Sbjct 439 TCACCTATATCAACTATTCCACCTGAAGC-AGCCAACACGA-GAC--T-AGCCAAAAGGA 493 Query 653 AGAAAGAGAACAAGCAGGGA-CT--ATCAAAGGTGAAA-AAAGTGGGTGAAGATCTGAAC 708 ||||||||| ||||||||| | |||||||| |||| |||||||| || ||||||||| Sbjct 494 AGAAAGAGAGTAAGCAGGGAGCACGATCAAAGG-GAAAGAAAGTGGGCGAGGATCTGAAC 552 Query 709 CGTCGAGTTCCTGCTCCTGGAAAGAAAT-CTAGAACAGATTGGGACAGTCAAGATGTCGG 767 | || |||| || |||| ||||||||| | |||| ||||||||||||| | |||||||| Sbjct 553 CATCAAGTTGCTTCTCCGGGAAAGAAAAGC-AGAAAAGATTGGGACAGTTACGATGTCGG 611 Query 768 TTTGAACTTAGTCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTTCGTGCACAGG 827 ||| ||| ||||||| ||||| |||||||||||||| || |||||||| | ||||| || Sbjct 612 TTTAAACCTAGTCACATTCGACGAGACGACAATGCCAGTGCCCATGTGCACTTGCACCGG 671 Query 828 CTCTACGCGTCAGTGTTACAAATGGGGAAATGGCGGCTGGCAATCGTCTTGCTGCACAAC 887 || | |||||||||||||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 672 GACTGCTCGTCAGTGTTACAAGTGGGGAAACGGCGGTTGGCAATCTTCTTGCTGCACAAC 731 Query 888 CACCTTATCCCAGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCG-GATGGGCG 946 ||| || || |||||||| | |||||||||||||||||| |||||||||| | ||| || Sbjct 732 CACTTTGTCTCAGTATCCGCTCCCGCAGATGCCAAACAAGCGGCATTCTCGAG-TGGCCG 790 Query 947 GTAGGAAAATGAGCGGAAACGTTTTCTCGAGATTACTCAGCCGTTTA 993 |||||||||||||||||| || ||||| || ||||| || |||||| Sbjct 791 GTAGGAAAATGAGCGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTA 837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47920506669 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5