BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21250.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480985 jgi|Araly1|480985|fgenesh2_kg.4__45__AT2G21250.1 1764 0.0
Ahg480986 jgi|Araly1|480986|fgenesh2_kg.4__46__AT2G21260.1 1432 0.0
> Ahg480985 jgi|Araly1|480985|fgenesh2_kg.4__45__AT2G21250.1
Length=1158
Score = 1764 bits (955), Expect = 0.0
Identities = 1096/1162 (94%), Gaps = 18/1162 (2%)
Strand=Plus/Plus
Query 1 ACACTGAGAAACTCTCAATCTGAGCAGATATTTACCCAATCAGGGATTCAGGAAGAGAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACTGAGAAACTCTCAATCTGAGCAGATATTTACCCAATCAGGGATTCAGGAAGAGAAG 60
Query 61 CAGAG-A-AAGAAATGGAGATAACACTGAACAGTGGCTTCAAGATGCCGATCGTCGGCTT 118
| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 C-GAGAAGAAGAAATGGAGATAACACTGAACAGTGGTTTCAAGATGCCGATCGTCGGCTT 119
Query 119 AGGAGTATGGAGAATGGAGAAGGAAGGGATTCGAGACCTTATCCTCAATGCCATCAAGAT 178
|||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 120 AGGAGTGTGGAGAATGGAGAAAGAAGGGATTCGAGACCTTATCATCAATGCCATCAAGAT 179
Query 179 CGGCTATCGCCATCTCGACTGTGCTGCTGATTATAGGAATGAGACCGAAGTTGGTGATGC 238
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 180 CGGCTATCGCCATCTCGACTGTGCTGCTGATTATAGGAACGAGGCCGAAGTTGGTGAGGC 239
Query 239 TCTTACAGAAGCATTCAAGACTGGTCTGGTTAAGAGGGAGGATCTCTTCATTACAACCAA 298
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 240 GCTTACAGAAGCATTCAAGACGGGTCTGGTCAAGAGGGAGGATCTCTTCATTACTACCAA 299
Query 299 GCTATGGAATTCAGACCATGGCCATGTCATTGAGGCCTGCAAAGACAGTCTCAAGAAACT 358
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 300 GCTATGGAATTCTGACCATGGCCATGTTATTGAGGCGTGCAAAGACAGTCTCAAGAAACT 359
Query 359 TCAACTTGATTACCTCGATCTCTTCCTCGTTCATTTTCCCGTAGCAACGAAACACACCGG 418
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 360 TCAACTTGATTACCTCGACCTTTTTCTCGTTCATTTTCCCGTAGCAACGAAACACACCGG 419
Query 419 AGTAGGGACAACCGATAGTGCTTTGGGCGATGACGGGGTATTGGACATAGACACGACCAT 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGTAGGAACAACCGATAGTGCTTTGGGCGATGACGGGGTATTGGACATAGACACGACCAT 479
Query 479 CTCTCTGGAAACTACATGGCACGACATGGAAAAGCTTGTTTCTATGGGTTTAGTCCGCAG 538
|||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 480 CTCTTTGGAAACTACATGGCATGACATGGAAAAACTTGTTTCTATGGGTTTGGTCCGCAG 539
Query 539 CATTGGAATCAGTAACTATGATGTCTTTCTAACGAGAGATTGCTTGGCTTACTCCAAGAT 598
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 540 CATTGGAATCAGTAACTATGACGTCTTTCTAACGAGAGATTGCTTGGCATACTCCAAGAT 599
Query 599 CAAACCTGCTGTGAATCAGATCGAGACACATCCTTACTTCCAACGTGATTCTCTTGTCAA 658
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CAAACCTGCTGTGAATCAAATCGAGATACATCCTTACTTCCAACGTGATTCTCTTGTCAA 659
Query 659 ATTCTGCCAGAAACATGGTATCTGTGTCACTGCTCATACTCCTCTCGGAGGTGCCACAGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATTCTGCCAGAAACATGGTATCTGTGTCACTGCTCATACTCCTCTCGGAGGTGCCACAGC 719
Query 719 CAATGCCGAGTGGTTTGGCACCGTGTCATGCCTGGATGATCCAGTTCTCAAAGATGTGGC 778
||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 720 CAACGCTGAGTGGTTTGGCACCGTGTCATGTCTGGATGACCCAGTTCTCAAAGATGTGGC 779
Query 779 CGAGAAGTACAAAAAGACAGTGGCACAAGTTGTCCTGAGGTGGGGAATCCAGAGAAAAAC 838
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 780 GGAGAAGTACAAAAAGACAGTGGCACAGGTTGTCCTGAGGTGGGGAATCCAGAGGAACAC 839
Query 839 GGTGGTGATACCAAAGACATCAAAGCCTGCGAGATTGGAAGAGAACTTTC-AGGTTTTCG 897
|||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||
Sbjct 840 AGTGGTGATACCAAAGACATCGAAGCCTACGAGATTGGAAGAGAA-TTTCCAGGTTTTCG 898
Query 898 ACTTCGAACTATCGAAAGAGGACATGGAAGTGATCAAAAGCATGGAGAGGAAATACCGCA 957
|||||||||| || ||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 899 ACTTCGAACTGTCAAAAGAGGACATGGAAGTGATCAAGACCATGGACAGGAAATACCGCA 958
Query 958 CGAACCAACCAGCCAAGTTTTGGAACATTGATCTCTACGCTTGAT---CACAC---T-CT 1010
||||||||||||||||||||||| |||||| ||||||||||||| ||||| | ||
Sbjct 959 CGAACCAACCAGCCAAGTTTTGGGGCATTGACCTCTACGCTTGATGATCACACGCATTCT 1018
Query 1011 CTCTATCTACATGAATAAATGAAGCTTAAGAAGATAAACAACGAGAAGAAGCCATAGCTT 1070
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 CTCTATCTACATGAATAAATGAAGCTTAAGAAGATAAACAA-GAGAAGAAGCCATAGCTT 1077
Query 1071 TACCTG-AA-A-CATTCTCAAATGTTTGTGAGCCTATCTTTCATACATAAACTCATGTTG 1127
||| || || | |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1078 TACTTGCAACAACATTCTTAAATGTTTGTGAGCCTATCTTTCATATATAAACTCATGTT- 1136
Query 1128 T-TAAACAGATTATGATTTCTT 1148
| ||||||||||||||||||||
Sbjct 1137 TATAAACAGATTATGATTTCTT 1158
> Ahg480986 jgi|Araly1|480986|fgenesh2_kg.4__46__AT2G21260.1
Length=1003
Score = 1432 bits (775), Expect = 0.0
Identities = 922/993 (93%), Gaps = 9/993 (1%)
Strand=Plus/Plus
Query 20 CTGAGCAGATATTTACCCAATCAGGGATTCAGGAAGAGAAGCAGAGAA--AGAAATGGAG 77
|||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||
Sbjct 1 CTGAGCAGATATTTACCCAATCAGGGGTTGAGGAAGAGAAGCA-AGAAGCAGAAATGGAG 59
Query 78 ATAACACTGAACAGTGGCTTCAAGATGCCGATCGTCGGCTTAGGAGTATGGAGAATGGAG 137
||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 ATAACACTGAACAATGGTTTCAAGATGCCGATCGTCGGCTTAGGAGTGTGGAGAATGGAG 119
Query 138 AAGGAAGGGATTCGAGACCTTATCCTCAATGCCATCAAG-ATCGGCTATCGCCATCTCGA 196
|| |||| |||||||||||||||| ||| |||||||||| || |||||||||||||||||
Sbjct 120 AAAGAAGAGATTCGAGACCTTATCATCAGTGCCATCAAGAAT-GGCTATCGCCATCTCGA 178
Query 197 CTGTGCTGCTGATTATAGGAATG-AGACCGAAGTTGGTGATGCTCTTACAGAAGCATTCA 255
|||||||| | |||||| ||| | || | ||||||||||| || ||||||||||||||||
Sbjct 179 CTGTGCTGGTAATTATAAGAACGAAG-CTGAAGTTGGTGAGGCGCTTACAGAAGCATTCA 237
Query 256 AGACTGGTCTGGTTAAGAGGGAGGATCTCTTCATTACAACCAAGCTATGGAATTCAGACC 315
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 238 AGACGGGTCTGGTCAAGAGGGAGGATCTCTTCATTACTACCAAGCTATGGAATTCTGACC 297
Query 316 ATGGCCATGTCATTGAGGCCTGCAAAGACAGTCTCAAGAAACTTCAACTTGATTACCTCG 375
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGGCCATGTTATTGAGGCGTGCAAAGACAGTCTCAAGAAACTTCAACTTGATTACCTCG 357
Query 376 ATCTCTTCCTCGTTCATTTTCCCGTAGCAACGAAACACACCGGAGTAGGGACAACCGATA 435
| || |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 358 ACCTTTTCCTCGTTCATTTACCCGTAGCAACGAAACACACGGGAGTAGGAACAACCGATA 417
Query 436 GTGCTTTGGGCGATGACGGGGTATTGGACATAGACACGACCATCTCTCTGGAAACTACAT 495
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 418 GTGCTTTGGGCGATGACGGGGTATTGGACATAGACACAACAATCTCTCTGGAAACTACAT 477
Query 496 GGCACGACATGGAAAAGCTTGTTT-CTATGGGTTTAGTCCGCAGCATTGGAATCAGTAAC 554
|||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||
Sbjct 478 GGCACGACATGGAAAAGCTTGTTTTC-ATGGGTTTGGTCCGCAGCATTGGACTCAGTAAC 536
Query 555 TATGATGTCTTTCTAACGAGAGATTGCTTGGCTTACTCCAAGATCAAACCTGCTGTGAAT 614
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 537 TGTGATGTCTTTCTAACGAGAGATTGCTTGGCTTACTCCAAGATCAAGCCTGCAGTGAAT 596
Query 615 CAGATCGAGACACATCCTTACTTCCAACGTGATTCTCTTGTCAAATTCTGCCAGAAACAT 674
||||| |||||||| |||||||||||||| |||||||||||||| || |||||||||||
Sbjct 597 CAGATAGAGACACACCCTTACTTCCAACGCGATTCTCTTGTCAAGTTTTGCCAGAAACAC 656
Query 675 GGTATCTGTGTCACTGCTCATACTCCTCTCGGAGGTGCCACAGCCAATGCCGAGTGGTTT 734
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 657 GGTATCTGTGTCACCGCTCATACTCCCCTCGGAGGTGCCACAGCCAATGCCGAATGGTTT 716
Query 735 GGCACCGTGTCATGCCTGGATGATCCAGTTCTCAAAGATGTGGCCGAGAAGTACAAAAAG 794
||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 717 GGCTCTGTGTCATGCCTGGATGACCCAGTTCTCAAAGATGTGGCGGAGAAGTACAAAAAG 776
Query 795 ACAGTGGCACAAGTTGTCCTGAGGTGGGGAATCCAGAGAAAAACGGTGGTGATACCAAAG 854
||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 777 ACAGTGGCACAGGTTGTCCTGAGGTGGGGAATTCAGAGAAACACAGTGGTGATACCAAAG 836
Query 855 ACATCAAAGCCTGCGAGATTGGAAGAGAACTTTCAGGTTTTCGACTTCGAACTATCGAAA 914
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 837 ACATCAAAGCCTGCAAGATTGGAAGAGAATTTTCAAGTTTTCGACTTCGAACTATCAAAA 896
Query 915 GAGGACATGGAAGTGATCAAAAGCATGGAGAGGAAATACCGCACGAACCAACCAGCCAAG 974
|||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||
Sbjct 897 GAGGACATGGAAGTGATCAAGAGCATGGACAGGAAATACCGCACGCACCAAACAGCCAAG 956
Query 975 TTTTGGAACATTGATCTCTACGCTTGATCACAC 1007
|||||| |||||| ||||||||||||||||||
Sbjct 957 TTTTGGGGCATTGAGCTCTACGCTTGATCACAC 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5