BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21260.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480986 jgi|Araly1|480986|fgenesh2_kg.4__46__AT2G21260.1 1463 0.0
Ahg480985 jgi|Araly1|480985|fgenesh2_kg.4__45__AT2G21250.1 1463 0.0
> Ahg480986 jgi|Araly1|480986|fgenesh2_kg.4__46__AT2G21260.1
Length=1003
Score = 1463 bits (792), Expect = 0.0
Identities = 936/1006 (93%), Gaps = 7/1006 (1%)
Strand=Plus/Plus
Query 21 CTGAGCAGATATCTACCCAATCACGGATTGAGG-AGAGAAGCAAGAAGAAGAAATGGAGA 79
|||||||||||| |||||||||| || |||||| |||||||||||||| |||||||||||
Sbjct 1 CTGAGCAGATATTTACCCAATCAGGGGTTGAGGAAGAGAAGCAAGAAGCAGAAATGGAGA 60
Query 80 TTACACTGAACAGTGGCTTCAAAATGCCGATCATCGGCTTAGGAGTTTGGAGAATGGAGA 139
| |||||||||| ||| ||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 61 TAACACTGAACAATGGTTTCAAGATGCCGATCGTCGGCTTAGGAGTGTGGAGAATGGAGA 120
Query 140 AAGAAGAGCTTCGAGACCTTATCATCGA-TGCCATCAAG-ATCGGTTATCGTCATCTCGA 197
|||||||| ||||||||||||||||| | |||||||||| || || ||||| ||||||||
Sbjct 121 AAGAAGAGATTCGAGACCTTATCATC-AGTGCCATCAAGAAT-GGCTATCGCCATCTCGA 178
Query 198 CTGTGCTGCTAATTATAAGAACGAAGCTGAAGTTGGTGAGGCTCTTACAGAAGCATTCAC 257
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 CTGTGCTGGTAATTATAAGAACGAAGCTGAAGTTGGTGAGGCGCTTACAGAAGCATTCAA 238
Query 258 GACAGGTCTTGTCAAGAGGGAGGATCTCTTCATTACGACTAAGCTATGGAGTTCAGACCA 317
||| ||||| |||||||||||||||||||||||||| || |||||||||| ||| |||||
Sbjct 239 GACGGGTCTGGTCAAGAGGGAGGATCTCTTCATTACTACCAAGCTATGGAATTCTGACCA 298
Query 318 TGGCCATGTTATTGAGGCATGCAAAGACAGTCTCAAGAAACTTCAACTTGATTACCTCGA 377
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGCCATGTTATTGAGGCGTGCAAAGACAGTCTCAAGAAACTTCAACTTGATTACCTCGA 358
Query 378 CCTTTTCCTCGTTCATATACCCATAGCTACAAAACACACGGGAATAGGAACAACCGATAG 437
|||||||||||||||| ||||| |||| || |||||||||||| ||||||||||||||||
Sbjct 359 CCTTTTCCTCGTTCATTTACCCGTAGCAACGAAACACACGGGAGTAGGAACAACCGATAG 418
Query 438 TGCTTTGGGGGATGATGGGGTATTGGACATAGATACAACAATCTCTCTGGAAACTACATG 497
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 TGCTTTGGGCGATGACGGGGTATTGGACATAGACACAACAATCTCTCTGGAAACTACATG 478
Query 498 GCACGACATGGAAAAGCTTG-TTTCTATGGGTTTAGTCCGCAGCATTGGAATCAGTAACT 556
|||||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||||
Sbjct 479 GCACGACATGGAAAAGCTTGTTTTC-ATGGGTTTGGTCCGCAGCATTGGACTCAGTAACT 537
Query 557 ATGATGTCTTTCTAACGAGAGATTGCTTGGCTTACTCCAAGATCAAACCTGCTGTGAATC 616
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 538 GTGATGTCTTTCTAACGAGAGATTGCTTGGCTTACTCCAAGATCAAGCCTGCAGTGAATC 597
Query 617 AGATCGAGACACATCCTTACTTCCAACGCGATTCTCTAGTCAAATTCTGCCAGAAACATG 676
|||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct 598 AGATAGAGACACACCCTTACTTCCAACGCGATTCTCTTGTCAAGTTTTGCCAGAAACACG 657
Query 677 GTATCTGTGTCACTGCTCATACTCCTCTGGGAGGTGCCACAGCCAATGCCGAATGGTTTG 736
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 658 GTATCTGTGTCACCGCTCATACTCCCCTCGGAGGTGCCACAGCCAATGCCGAATGGTTTG 717
Query 737 GCACCGTGTCATGTCTGGATGACCCAGTTCTCAAAGATGTGGCCGAGAAGTACAAACAGA 796
|| | |||||||| ||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 718 GCTCTGTGTCATGCCTGGATGACCCAGTTCTCAAAGATGTGGCGGAGAAGTACAAAAAGA 777
Query 797 CAGTGGCACAGATTGTCCTGAGGTGGGGAATTCAGAGGAACACGGTGGTGATACCAAAGA 856
||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 778 CAGTGGCACAGGTTGTCCTGAGGTGGGGAATTCAGAGAAACACAGTGGTGATACCAAAGA 837
Query 857 CATCGAAGCCTGAAAGATTGGAAGAGAATTTTCAGGTTTTCGACTTCCAACTATCGAAAG 916
|||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 838 CATCAAAGCCTGCAAGATTGGAAGAGAATTTTCAAGTTTTCGACTTCGAACTATCAAAAG 897
Query 917 AGGACATGGAAGTGATCAAAAGCATGGAGAGGAATTACCGCACGCACCAAACAGCCAAGT 976
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 898 AGGACATGGAAGTGATCAAGAGCATGGACAGGAAATACCGCACGCACCAAACAGCCAAGT 957
Query 977 TTTGGGGCATTGAGCTCTACGCTTGATCACACACACActctctctc 1022
|||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 958 TTTGGGGCATTGAGCTCTACGCTTGATCACACACACACACACTCTC 1003
> Ahg480985 jgi|Araly1|480985|fgenesh2_kg.4__45__AT2G21250.1
Length=1158
Score = 1463 bits (792), Expect = 0.0
Identities = 975/1063 (92%), Gaps = 13/1063 (1%)
Strand=Plus/Plus
Query 3 ACTGGGAAACTCTCAATTCTGAGCAGATATCTACCCAATCACGGATTGAGG-AGAGAAGC 61
|||| ||||||||||| ||||||||||||| |||||||||| ||||| ||| ||||||||
Sbjct 3 ACTGAGAAACTCTCAA-TCTGAGCAGATATTTACCCAATCAGGGATTCAGGAAGAGAAGC 61
Query 62 AAGAAGAAGAAATGGAGATTACACTGAACAGTGGCTTCAAAATGCCGATCATCGGCTTAG 121
|||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||
Sbjct 62 GAGAAGAAGAAATGGAGATAACACTGAACAGTGGTTTCAAGATGCCGATCGTCGGCTTAG 121
Query 122 GAGTTTGGAGAATGGAGAAAGAAGAGCTTCGAGACCTTATCATCGATGCCATCAAGATCG 181
|||| ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 122 GAGTGTGGAGAATGGAGAAAGAAGGGATTCGAGACCTTATCATCAATGCCATCAAGATCG 181
Query 182 GTTATCGTCATCTCGACTGTGCTGCTAATTATAAGAACGAAGCTGAAGTTGGTGAGGCTC 241
| ||||| |||||||||||||||||| |||||| |||||| || |||||||||||||| |
Sbjct 182 GCTATCGCCATCTCGACTGTGCTGCTGATTATAGGAACGAGGCCGAAGTTGGTGAGGCGC 241
Query 242 TTACAGAAGCATTCACGACAGGTCTTGTCAAGAGGGAGGATCTCTTCATTACGACTAAGC 301
||||||||||||||| ||| ||||| |||||||||||||||||||||||||| || ||||
Sbjct 242 TTACAGAAGCATTCAAGACGGGTCTGGTCAAGAGGGAGGATCTCTTCATTACTACCAAGC 301
Query 302 TATGGAGTTCAGACCATGGCCATGTTATTGAGGCATGCAAAGACAGTCTCAAGAAACTTC 361
|||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 302 TATGGAATTCTGACCATGGCCATGTTATTGAGGCGTGCAAAGACAGTCTCAAGAAACTTC 361
Query 362 AACTTGATTACCTCGACCTTTTCCTCGTTCATATACCCATAGCTACAAAACACACGGGAA 421
|||||||||||||||||||||| ||||||||| | ||| |||| || |||||||| |||
Sbjct 362 AACTTGATTACCTCGACCTTTTTCTCGTTCATTTTCCCGTAGCAACGAAACACACCGGAG 421
Query 422 TAGGAACAACCGATAGTGCTTTGGGGGATGATGGGGTATTGGACATAGATACAACAATCT 481
||||||||||||||||||||||||| ||||| ||||||||||||||||| || || ||||
Sbjct 422 TAGGAACAACCGATAGTGCTTTGGGCGATGACGGGGTATTGGACATAGACACGACCATCT 481
Query 482 CTCTGGAAACTACATGGCACGACATGGAAAAGCTTGTTTCTATGGGTTTAGTCCGCAGCA 541
|| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 482 CTTTGGAAACTACATGGCATGACATGGAAAAACTTGTTTCTATGGGTTTGGTCCGCAGCA 541
Query 542 TTGGAATCAGTAACTATGATGTCTTTCTAACGAGAGATTGCTTGGCTTACTCCAAGATCA 601
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 542 TTGGAATCAGTAACTATGACGTCTTTCTAACGAGAGATTGCTTGGCATACTCCAAGATCA 601
Query 602 AACCTGCTGTGAATCAGATCGAGACACATCCTTACTTCCAACGCGATTCTCTAGTCAAAT 661
|||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 602 AACCTGCTGTGAATCAAATCGAGATACATCCTTACTTCCAACGTGATTCTCTTGTCAAAT 661
Query 662 TCTGCCAGAAACATGGTATCTGTGTCACTGCTCATACTCCTCTGGGAGGTGCCACAGCCA 721
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 662 TCTGCCAGAAACATGGTATCTGTGTCACTGCTCATACTCCTCTCGGAGGTGCCACAGCCA 721
Query 722 ATGCCGAATGGTTTGGCACCGTGTCATGTCTGGATGACCCAGTTCTCAAAGATGTGGCCG 781
| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 722 ACGCTGAGTGGTTTGGCACCGTGTCATGTCTGGATGACCCAGTTCTCAAAGATGTGGCGG 781
Query 782 AGAAGTACAAACAGACAGTGGCACAGATTGTCCTGAGGTGGGGAATTCAGAGGAACACGG 841
||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 782 AGAAGTACAAAAAGACAGTGGCACAGGTTGTCCTGAGGTGGGGAATCCAGAGGAACACAG 841
Query 842 TGGTGATACCAAAGACATCGAAGCCTGAA-AGATTGGAAGAGAATTTTCAGGTTTTCGAC 900
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 842 TGGTGATACCAAAGACATCGAAGCCT-ACGAGATTGGAAGAGAATTTCCAGGTTTTCGAC 900
Query 901 TTCCAACTATCGAAAGAGGACATGGAAGTGATCAAAAGCATGGAGAGGAATTACCGCACG 960
||| |||| || ||||||||||||||||||||||| | |||||| ||||| |||||||||
Sbjct 901 TTCGAACTGTCAAAAGAGGACATGGAAGTGATCAAGACCATGGACAGGAAATACCGCACG 960
Query 961 CACCAAACAGCCAAGTTTTGGGGCATTGAGCTCTACGCTTGATCA-CACACACActctct 1019
||||| |||||||||||||||||||||| ||||||||||||| | ||||| || | |||
Sbjct 961 AACCAACCAGCCAAGTTTTGGGGCATTGACCTCTACGCTTGATGATCACACGCA-T-TCT 1018
Query 1020 ctctctATCTATCTATATGAATAAATGAAGCTTAAGAATATAA 1062
|||| ||||| | || |||||||||||||||||||| ||||
Sbjct 1019 CTCT--ATCTA-C-AT--GAATAAATGAAGCTTAAGAAGATAA 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5